RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 TMEM52BQ4KMG9 183 aa25.23■■□□□ 1.63
HMGN1-217ENST00000489072 CCDC157Q569K6 752 aa25.23■■□□□ 1.63
HMGN1-217ENST00000489072 TPRG1LQ5T0D9 272 aa25.23■■□□□ 1.63
HMGN1-217ENST00000489072 TMCO4Q5TGY1 634 aa25.23■■□□□ 1.63
HMGN1-217ENST00000489072 SLC25A45Q8N413 288 aa25.23■■□□□ 1.63
HMGN1-217ENST00000489072 DENND6BQ8NEG7 585 aa25.23■■□□□ 1.63
HMGN1-217ENST00000489072 CXorf40AQ8TE69 158 aa25.23■■□□□ 1.63
HMGN1-217ENST00000489072 CENPTQ96BT3 561 aa25.23■■□□□ 1.63
HMGN1-217ENST00000489072 DEF6Q9H4E7 631 aa25.23■■□□□ 1.63
HMGN1-217ENST00000489072 PCDH12Q9NPG4 1184 aa25.23■■□□□ 1.63
HMGN1-217ENST00000489072 UCKL1Q9NWZ5 548 aa25.23■■□□□ 1.63
HMGN1-217ENST00000489072 FREM2Q5SZK8 3169 aa25.23■■□□□ 1.63
HMGN1-217ENST00000489072 KNTC1P50748 2209 aa25.22■■□□□ 1.63
HMGN1-217ENST00000489072 DMXL2Q8TDJ6 3036 aa25.22■■□□□ 1.63
HMGN1-217ENST00000489072 FPGTO14772 594 aa25.22■■□□□ 1.63
HMGN1-217ENST00000489072 AKR1B10O60218 316 aa25.22■■□□□ 1.63
HMGN1-217ENST00000489072 XPAP23025 273 aaPredicted RBP25.22■■□□□ 1.63
HMGN1-217ENST00000489072 DGKAP23743 735 aa25.22■■□□□ 1.63
HMGN1-217ENST00000489072 GJC1P36383 396 aa25.22■■□□□ 1.63
HMGN1-217ENST00000489072 SUOXP51687 545 aa25.22■■□□□ 1.63
HMGN1-217ENST00000489072 TAS2R40P59535 323 aa25.22■■□□□ 1.63
HMGN1-217ENST00000489072 NSUN2Q08J23 767 aaKnown RBP eCLIP25.22■■□□□ 1.63
HMGN1-217ENST00000489072 FZD2Q14332 565 aa25.22■■□□□ 1.63
HMGN1-217ENST00000489072 LBRQ14739 615 aaKnown RBP25.22■■□□□ 1.63
HMGN1-217ENST00000489072 HADHQ16836 314 aaKnown RBP25.22■■□□□ 1.63
HMGN1-217ENST00000489072 ZNF542PQ5EBM4 170 aa25.22■■□□□ 1.63
HMGN1-217ENST00000489072 DCP2Q8IU60 420 aaKnown RBP25.22■■□□□ 1.63
HMGN1-217ENST00000489072 ZNF599Q96NL3 588 aa25.22■■□□□ 1.63
HMGN1-217ENST00000489072 PSKH2Q96QS6 385 aa25.22■■□□□ 1.63
HMGN1-217ENST00000489072 ATP13A3Q9H7F0 1226 aa25.22■■□□□ 1.63
HMGN1-217ENST00000489072 SPTLC3Q9NUV7 552 aa25.22■■□□□ 1.63
HMGN1-217ENST00000489072 RCOR3Q9P2K3 495 aaPredicted RBP25.22■■□□□ 1.63
HMGN1-217ENST00000489072 SEPT3Q9UH03 358 aa25.22■■□□□ 1.63
HMGN1-217ENST00000489072 TTC24A2A3L6 582 aaPredicted RBP25.21■■□□□ 1.63
HMGN1-217ENST00000489072 MAFKO60675 156 aa25.21■■□□□ 1.63
HMGN1-217ENST00000489072 TM7SF2O76062 418 aa25.21■■□□□ 1.63
HMGN1-217ENST00000489072 PRKCGP05129 697 aa25.21■■□□□ 1.63
HMGN1-217ENST00000489072 TPM1P09493 284 aa25.21■■□□□ 1.63
HMGN1-217ENST00000489072 TMEM253P0C7T8 217 aa25.21■■□□□ 1.63
HMGN1-217ENST00000489072 IGFALSP35858 605 aa25.21■■□□□ 1.63
HMGN1-217ENST00000489072 RABIFP47224 123 aa25.21■■□□□ 1.63
HMGN1-217ENST00000489072 PFN3P60673 137 aa25.21■■□□□ 1.63
HMGN1-217ENST00000489072 ELP6Q0PNE2 266 aa25.21■■□□□ 1.63
HMGN1-217ENST00000489072 TBX2Q13207 712 aaPredicted RBP25.21■■□□□ 1.63
HMGN1-217ENST00000489072 DPYSL3Q14195 570 aa25.21■■□□□ 1.63
HMGN1-217ENST00000489072 BRAT1Q6PJG6 821 aa25.21■■□□□ 1.63
HMGN1-217ENST00000489072 IFT43Q96FT9 208 aa25.21■■□□□ 1.63
HMGN1-217ENST00000489072 NHEJ1Q9H9Q4 299 aaPredicted RBP25.21■■□□□ 1.63
HMGN1-217ENST00000489072 COQ6Q9Y2Z9 468 aa25.21■■□□□ 1.63
HMGN1-217ENST00000489072 SPTY2D1-AS1A0A0U1RR47 76 aa25.2■■□□□ 1.62
HMGN1-217ENST00000489072 TRIM38O00635 465 aa25.2■■□□□ 1.62
HMGN1-217ENST00000489072 RIOK3O14730 519 aaKnown RBP25.2■■□□□ 1.62
HMGN1-217ENST00000489072 PIAS2O75928 621 aa25.2■■□□□ 1.62
HMGN1-217ENST00000489072 SERPINA4P29622 427 aa25.2■■□□□ 1.62
HMGN1-217ENST00000489072 SCNN1BP51168 640 aa25.2■■□□□ 1.62
HMGN1-217ENST00000489072 SEMG2Q02383 582 aa25.2■■□□□ 1.62
HMGN1-217ENST00000489072 TSR1Q2NL82 804 aaKnown RBP25.2■■□□□ 1.62
HMGN1-217ENST00000489072 CCNI2Q6ZMN8 369 aaPredicted RBP25.2■■□□□ 1.62
HMGN1-217ENST00000489072 TMPRSS7Q7RTY8 843 aa25.2■■□□□ 1.62
HMGN1-217ENST00000489072 PGBD5Q8N414 524 aa25.2■■□□□ 1.62
HMGN1-217ENST00000489072 TP53I13Q8NBR0 393 aaPredicted RBP25.2■■□□□ 1.62
HMGN1-217ENST00000489072 ECHDC3Q96DC8 303 aa25.2■■□□□ 1.62
HMGN1-217ENST00000489072 MBNL1Q9NR56 388 aaKnown RBP25.2■■□□□ 1.62
HMGN1-217ENST00000489072 DNAJC28Q9NX36 388 aa25.2■■□□□ 1.62
HMGN1-217ENST00000489072 GIMD1P0DJR0 217 aa25.19■■□□□ 1.62
HMGN1-217ENST00000489072 SERPINB6P35237 376 aa25.19■■□□□ 1.62
HMGN1-217ENST00000489072 MMP12P39900 470 aa25.19■■□□□ 1.62
HMGN1-217ENST00000489072 ACADVLP49748 655 aa25.19■■□□□ 1.62
HMGN1-217ENST00000489072 RENBPP51606 427 aa25.19■■□□□ 1.62
HMGN1-217ENST00000489072 BCL2L1Q07817 233 aa25.19■■□□□ 1.62
HMGN1-217ENST00000489072 PDE1CQ14123 709 aaPredicted RBP25.19■■□□□ 1.62
HMGN1-217ENST00000489072 CFAP58Q5T655 872 aa25.19■■□□□ 1.62
HMGN1-217ENST00000489072 DHRS13Q6UX07 377 aa25.19■■□□□ 1.62
HMGN1-217ENST00000489072 MARCH9Q86YJ5 346 aa25.19■■□□□ 1.62
HMGN1-217ENST00000489072 ATPAF2Q8N5M1 289 aa25.19■■□□□ 1.62
HMGN1-217ENST00000489072 KDF1Q8NAX2 398 aaPredicted RBP25.19■■□□□ 1.62
HMGN1-217ENST00000489072 PCDH19Q8TAB3 1148 aa25.19■■□□□ 1.62
HMGN1-217ENST00000489072 KLF15Q9UIH9 416 aa25.19■■□□□ 1.62
HMGN1-217ENST00000489072 ATP8A1Q9Y2Q0 1164 aa25.19■■□□□ 1.62
HMGN1-217ENST00000489072 ANKRD11Q6UB99 2663 aaPredicted RBP25.18■■□□□ 1.62
HMGN1-217ENST00000489072 TMEM110-MUSTN1A8MSY1 372 aa25.18■■□□□ 1.62
HMGN1-217ENST00000489072 TRAFD1O14545 582 aaPredicted RBP25.18■■□□□ 1.62
HMGN1-217ENST00000489072 SIGLEC6O43699 453 aa25.18■■□□□ 1.62
HMGN1-217ENST00000489072 MFSD11O43934 449 aa25.18■■□□□ 1.62
HMGN1-217ENST00000489072 CR2P20023 1033 aa25.18■■□□□ 1.62
HMGN1-217ENST00000489072 AP1S1P61966 158 aa25.18■■□□□ 1.62
HMGN1-217ENST00000489072 ZNF235Q14590 738 aa25.18■■□□□ 1.62
HMGN1-217ENST00000489072 PROX2Q3B8N5 592 aa25.18■■□□□ 1.62
HMGN1-217ENST00000489072 ERAP2Q6P179 960 aa25.18■■□□□ 1.62
HMGN1-217ENST00000489072 SARM1Q6SZW1 724 aa25.18■■□□□ 1.62
HMGN1-217ENST00000489072 PARGQ86W56 976 aa25.18■■□□□ 1.62
HMGN1-217ENST00000489072 CCDC42Q96M95 316 aa25.18■■□□□ 1.62
HMGN1-217ENST00000489072 PCDHGA1Q9Y5H4 931 aa25.18■■□□□ 1.62
HMGN1-217ENST00000489072 AKR1B15C9JRZ8 316 aaPredicted RBP25.17■■□□□ 1.62
HMGN1-217ENST00000489072 CSF2P04141 144 aa25.17■■□□□ 1.62
HMGN1-217ENST00000489072 C6P13671 934 aa25.17■■□□□ 1.62
HMGN1-217ENST00000489072 NME1P15531 152 aaKnown RBP25.17■■□□□ 1.62
HMGN1-217ENST00000489072 MAN1A1P33908 653 aa25.17■■□□□ 1.62
HMGN1-217ENST00000489072 LIG3P49916 1009 aa25.17■■□□□ 1.62
HMGN1-217ENST00000489072 EIF2B5Q13144 721 aaKnown RBP25.17■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms