RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 SYPP08247 313 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 ENGP17813 658 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 DYNLT1P63172 113 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 ELP6Q0PNE2 266 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 OVGP1Q12889 678 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 XRCC4Q13426 336 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 TEAD4Q15561 434 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 SLC14A2Q15849 920 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 TMEM52BQ4KMG9 183 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 CFAP58Q5T655 872 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 IQCHQ86VS3 1027 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 ZSWIM9Q86XI8 627 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 CCNYQ8ND76 341 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 DENND6BQ8NEG7 585 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 ARRDC2Q8TBH0 407 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 ANP32BQ92688 251 aaKnown RBP16.03■□□□□ 0.16
UPF3A-208ENST00000484246 P3H4Q92791 437 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 FEM1CQ96JP0 617 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 SLC6A18Q96N87 628 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 C1QTNF2Q9BXJ5 285 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 NT5MQ9NPB1 228 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 SCUBE2Q9NQ36 999 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 RBM22Q9NW64 420 aaKnown RBP eCLIP16.03■□□□□ 0.162e-10■■■■■ 44.4
UPF3A-208ENST00000484246 DLL3Q9NYJ7 618 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 GUCA1BQ9UMX6 200 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 PPP2R2CQ9Y2T4 447 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 THADAQ6YHU6 1953 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 PCDH15Q96QU1 1955 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 HACD1B0YJ81 288 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 PRAMEF26H0Y7S4 382 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 KCNK1O00180 336 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 CDX4O14627 284 aaPredicted RBP16.02■□□□□ 0.16
UPF3A-208ENST00000484246 SLC30A4O14863 429 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 HLA-DQB2P05538 268 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 PYGMP11217 842 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 HNRNPA2B1P22626 353 aaKnown RBP16.02■□□□□ 0.16
UPF3A-208ENST00000484246 MMP12P39900 470 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 CETN2P41208 172 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 MAXP61244 160 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 BNC1Q01954 994 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 GRIK2Q13002 908 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 ZBTB17Q13105 803 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 NOMO1Q15155 1222 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 KAZNQ674X7 775 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 SEL1L3Q68CR1 1132 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 IL27RAQ6UWB1 636 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 TTC7BQ86TV6 843 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 CNTD1Q8N815 330 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 FAM174AQ8TBP5 190 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 TFB1MQ8WVM0 346 aaKnown RBP16.02■□□□□ 0.16
UPF3A-208ENST00000484246 SERAC1Q96JX3 654 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 QKIQ96PU8 341 aaKnown RBP eCLIP16.02■□□□□ 0.16
UPF3A-208ENST00000484246 LENG8Q96PV6 779 aaPredicted RBP16.02■□□□□ 0.16
UPF3A-208ENST00000484246 SEMA3CQ99985 751 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 HERPUD2Q9BSE4 406 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 PCDH12Q9NPG4 1184 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 DNAAF2Q9NVR5 837 aaKnown RBP16.02■□□□□ 0.16
UPF3A-208ENST00000484246 ITM2BQ9Y287 266 aa16.02■□□□□ 0.16
UPF3A-208ENST00000484246 RIOK3O14730 519 aaKnown RBP16.01■□□□□ 0.15
UPF3A-208ENST00000484246 FZD6O60353 706 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 GDF9O60383 454 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 ZNF189O75820 626 aaPredicted RBP16.01■□□□□ 0.15
UPF3A-208ENST00000484246 TJP3O95049 919 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 PCDH8O95206 1070 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 PGLSO95336 258 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 POLR2LP62875 67 aaKnown RBP16.01■□□□□ 0.15
UPF3A-208ENST00000484246 TRAF2Q12933 501 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 FGL2Q14314 439 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 AGERQ15109 404 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 STPG1Q5TH74 334 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 ERAP2Q6P179 960 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 MFSD2AQ8NA29 543 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 SKA1Q96BD8 255 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 TADA1Q96BN2 335 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 ALS2CR12Q96Q35 445 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 PHF12Q96QT6 1004 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 VAT1Q99536 393 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 TMEM9BQ9NQ34 198 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 GGT7Q9UJ14 662 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 CDV3Q9UKY7 258 aaKnown RBP16.01■□□□□ 0.15
UPF3A-208ENST00000484246 PPIL1Q9Y3C6 166 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 NUMA1Q14980 2115 aa16.01■□□□□ 0.15
UPF3A-208ENST00000484246 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16■□□□□ 0.15
UPF3A-208ENST00000484246 NEMP1O14524 444 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 JCHAINP01591 159 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 ZNF883P0CG24 379 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 XPAP23025 273 aaPredicted RBP16■□□□□ 0.15
UPF3A-208ENST00000484246 NFKBIAP25963 317 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 CD38P28907 300 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 MAT2AP31153 395 aaKnown RBP16■□□□□ 0.15
UPF3A-208ENST00000484246 AKT2P31751 481 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 CTSKP43235 329 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 RPL26P61254 145 aaKnown RBP16■□□□□ 0.15
UPF3A-208ENST00000484246 AP1B1Q10567 949 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 RALGDSQ12967 914 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 KLF1Q13351 362 aaPredicted RBP16■□□□□ 0.15
UPF3A-208ENST00000484246 IHHQ14623 411 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 SLC45A4Q5BKX6 768 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 DPPA4Q7L190 304 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 ABI3BPQ7Z7G0 1075 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms