RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 GZMAP12544 262 aa18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 MIPP30301 263 aa18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 RGRP47804 291 aa18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 ZNF165P49910 485 aa18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 PAPOLAP51003 745 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 SUOXP51687 545 aa18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 IRF4Q15306 451 aa18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 TMEM52BQ4KMG9 183 aa18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 ERMARDQ5T6L9 678 aa18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 CAVIN1Q6NZI2 390 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 MACC1Q6ZN28 852 aa18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 RFX8Q6ZV50 586 aa18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 ZSWIM9Q86XI8 627 aa18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 DCBLD2Q96PD2 775 aa18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 NCAPGQ9BPX3 1015 aa18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 FUCA2Q9BTY2 467 aa18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 C1QTNF7Q9BXJ2 289 aa18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 PCDH12Q9NPG4 1184 aa18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 APOBEC3BQ9UH17 382 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 BRINP1O60477 761 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 LRCH4O75427 683 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 GCATO75600 419 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 MMP12P39900 470 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 EIF2S3P41091 472 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 THOP1P52888 689 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 YPEL5P62699 121 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 ELP6Q0PNE2 266 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 IQCB1Q15051 598 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 UGP2Q16851 508 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 DEFB133Q30KQ1 61 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 FILIP1LQ4L180 1135 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 ARHGAP36Q6ZRI8 547 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 TSEN2Q8NCE0 465 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 IFI44Q8TCB0 444 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 HCAR2Q8TDS4 363 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 LMX1AQ8TE12 382 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 ZNF653Q96CK0 615 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 LRRC61Q9BV99 259 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 SUV39H2Q9H5I1 410 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 DONSONQ9NYP3 566 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 CNOT8Q9UFF9 292 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 COQ6Q9Y2Z9 468 aa18.97■□□□□ 0.63
CCDC88B-206ENST00000473405 SHROOM3Q8TF72 1996 aa18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 ARHGAP42A6NI28 874 aa18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 RNF8O76064 485 aa18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 C6P13671 934 aa18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 ERCC2P18074 760 aa18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 KLHL30Q0D2K2 578 aa18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 DPYSQ14117 519 aa18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 PTK2BQ14289 1009 aa18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 GRM3Q14832 879 aa18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 CDKN3Q16667 212 aa18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 WSCD2Q2TBF2 565 aa18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 PPP6R3Q5H9R7 873 aaPredicted RBP18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 GUSBP11Q6P575 273 aa18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 BRAT1Q6PJG6 821 aa18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 CAMK1DQ8IU85 385 aa18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 PHACTR4Q8IZ21 702 aa18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 SNIP1Q8TAD8 396 aaKnown RBP18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 BTN2A2Q8WVV5 523 aa18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 ZNF641Q96N77 438 aaPredicted RBP18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 TUBGCP5Q96RT8 1024 aa18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 BOCQ9BWV1 1114 aa18.96■□□□□ 0.63
CCDC88B-206ENST00000473405 TOR1BO14657 336 aa18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 RIOK3O14730 519 aaKnown RBP18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 TPP1O14773 563 aa18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 PRPSAP2O60256 369 aa18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 LZTS3O60299 673 aaPredicted RBP18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 SKILP12757 684 aa18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 XPAP23025 273 aaPredicted RBP18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 ITPKBP27987 946 aa18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 EIF4A3P38919 411 aaKnown RBP18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 ABCG1P45844 678 aa18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 CSNK1DP48730 415 aa18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 DUSP3P51452 185 aaPredicted RBP18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 NR1I3Q14994 352 aa18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 LRRC14Q15048 493 aa18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 AGERQ15109 404 aa18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 SOWAHCQ53LP3 525 aaPredicted RBP18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 PRRT3Q5FWE3 981 aa18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 PSTKQ8IV42 348 aaKnown RBP18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 TP53INP2Q8IXH6 220 aa18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 TBATAQ96M53 351 aa18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 EDEM3Q9BZQ6 932 aa18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 CLPBQ9H078 707 aa18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 NCKIPSDQ9NZQ3 722 aa18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 CWC15Q9P013 229 aaKnown RBP18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 SPASTQ9UBP0 616 aa18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 SALL4Q9UJQ4 1053 aa18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 SCINQ9Y6U3 715 aa18.95■□□□□ 0.62
CCDC88B-206ENST00000473405 KIF26BQ2KJY2 2108 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 LMO7DNF2Z398 122 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 DFFAO00273 331 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 MUSKO15146 869 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 DAPK3O43293 454 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 CSO75390 466 aaKnown RBP18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 PALMO75781 387 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 PRKCGP05129 697 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 CELA2BP08218 269 aaPredicted RBP18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 TCF4P15884 667 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms