RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 ANO4Q32M45 955 aa12.54□□□□□ -0.4
HDAC4-208ENST00000463007 SPANXN3Q5MJ09 141 aa12.54□□□□□ -0.4
HDAC4-208ENST00000463007 ESRP1Q6NXG1 681 aaKnown RBP12.54□□□□□ -0.4
HDAC4-208ENST00000463007 SPPL2CQ8IUH8 684 aa12.54□□□□□ -0.4
HDAC4-208ENST00000463007 CBR4Q8N4T8 237 aa12.54□□□□□ -0.4
HDAC4-208ENST00000463007 GIPC3Q8TF64 312 aa12.54□□□□□ -0.4
HDAC4-208ENST00000463007 CNDP1Q96KN2 507 aa12.54□□□□□ -0.4
HDAC4-208ENST00000463007 SLC2A13Q96QE2 648 aa12.54□□□□□ -0.4
HDAC4-208ENST00000463007 NUDT5Q9UKK9 219 aa12.54□□□□□ -0.4
HDAC4-208ENST00000463007 PIN4Q9Y237 131 aaKnown RBP12.54□□□□□ -0.4
HDAC4-208ENST00000463007 J3QRK9 145 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 DAB1O75553 588 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 BCAS2O75934 225 aaPredicted RBP12.53□□□□□ -0.4
HDAC4-208ENST00000463007 ATP5BP06576 529 aaKnown RBP12.53□□□□□ -0.4
HDAC4-208ENST00000463007 TAF6P49848 677 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 CDK18Q07002 472 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 INSCQ1MX18 579 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 SLC25A52Q3SY17 297 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 LDLRAP1Q5SW96 308 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 FAM35AQ86V20 835 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 LSMEM2Q8N112 164 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 SIX6OS1Q8N1H7 587 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 TMEM102Q8N9M5 508 aaPredicted RBP12.53□□□□□ -0.4
HDAC4-208ENST00000463007 B3GALNT2Q8NCR0 500 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 FBXL8Q96CD0 374 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 NPY6RQ99463 290 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 DRC3Q9H069 523 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 ZNF408Q9H9D4 720 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 BCAP29Q9UHQ4 241 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 H6PDO95479 791 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 FYNP06241 537 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 SBK3P0C264 359 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 CHRNA4P43681 627 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 C1QTNF8P60827 252 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 ZNF470Q6ECI4 717 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 OGFOD2Q6N063 350 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 ZFP1Q6P2D0 407 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 POTEHQ6S545 545 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 ARHGAP36Q6ZRI8 547 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 CYS1Q717R9 158 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 TXNDC5Q8NBS9 432 aaKnown RBP12.53□□□□□ -0.4
HDAC4-208ENST00000463007 DUSP16Q9BY84 665 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 NAA50Q9GZZ1 169 aaKnown RBP12.53□□□□□ -0.4
HDAC4-208ENST00000463007 DDIT4Q9NX09 232 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 NR5A2O00482 541 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 TADA2AO75478 443 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 SUPT7LO94864 414 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 PENKP01210 267 aaPredicted RBP12.53□□□□□ -0.4
HDAC4-208ENST00000463007 SLC35E2BP0CK96 405 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 GABRB3P28472 473 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 YBX1P67809 324 aaKnown RBP12.53□□□□□ -0.4
HDAC4-208ENST00000463007 TRIM25Q14258 630 aaKnown RBP12.53□□□□□ -0.4
HDAC4-208ENST00000463007 CCL14Q16627 93 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 ZIK1Q3SY52 487 aaPredicted RBP12.53□□□□□ -0.4
HDAC4-208ENST00000463007 UTS2BQ765I0 119 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 ZNF354CQ86Y25 554 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 CENPLQ8N0S6 344 aaPredicted RBP12.53□□□□□ -0.4
HDAC4-208ENST00000463007 CATSPER1Q8NEC5 780 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 APPL2Q8NEU8 664 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 FBXL20Q96IG2 436 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 HAUS8Q9BT25 410 aa12.53□□□□□ -0.4
HDAC4-208ENST00000463007 MLPHQ9BV36 600 aaPredicted RBP12.53□□□□□ -0.4
HDAC4-208ENST00000463007 A0A1W2PPW3 197 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 TTC24A2A3L6 582 aaPredicted RBP12.52□□□□□ -0.41
HDAC4-208ENST00000463007 HEATR9A2RTY3 570 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 I6L893 689 aaPredicted RBP12.52□□□□□ -0.41
HDAC4-208ENST00000463007 PSMD12O00232 456 aaPredicted RBP12.52□□□□□ -0.41
HDAC4-208ENST00000463007 TRIM38O00635 465 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 MRASO14807 208 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 UBDO15205 165 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 ALOX15P16050 662 aaPredicted RBP12.52□□□□□ -0.41
HDAC4-208ENST00000463007 TAS2R39P59534 338 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 SEMA3BQ13214 749 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 DPYSQ14117 519 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 FAM83EQ2M2I3 478 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 SV2CQ496J9 727 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 ZNF789Q5FWF6 425 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 OTUD3Q5T2D3 398 aaPredicted RBP12.52□□□□□ -0.41
HDAC4-208ENST00000463007 BHLHA9Q7RTU4 235 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 GPR141Q7Z602 305 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 DDI1Q8WTU0 396 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 PRDM16Q9HAZ2 1276 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 TMEM30AQ9NV96 361 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 TSR3Q9UJK0 312 aaKnown RBP12.52□□□□□ -0.41
HDAC4-208ENST00000463007 FNDC3AQ9Y2H6 1198 aaKnown RBP12.52□□□□□ -0.41
HDAC4-208ENST00000463007 PRSS51A0A1B0GVH4 220 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 FAM95CA0A1B0GW59 222 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 ACOT8O14734 319 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 ZSCAN9O15535 394 aaPredicted RBP12.52□□□□□ -0.41
HDAC4-208ENST00000463007 B4GAT1O43505 415 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 TIMM44O43615 452 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 PGK1P00558 417 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 MLNP12872 115 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 STMN1P16949 149 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 ARL1P40616 181 aaPredicted RBP12.52□□□□□ -0.41
HDAC4-208ENST00000463007 EMP3P54852 163 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 ESRRGP62508 458 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 PURAQ00577 322 aaKnown RBP12.52□□□□□ -0.41
HDAC4-208ENST00000463007 RBM20Q5T481 1227 aaKnown RBP12.52□□□□□ -0.41
HDAC4-208ENST00000463007 METTL21CQ5VZV1 264 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms