RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, human

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSH6-204	ENST00000445503	SQLE	Q14534	574 aa		11.96	□□□□□ -0.5
MSH6-204	ENST00000445503	MYLK3	Q32MK0	819 aa		11.96	□□□□□ -0.5
MSH6-204	ENST00000445503	NOL9	Q5SY16	702 aa	Known RBP	11.96	□□□□□ -0.5
MSH6-204	ENST00000445503	GPRIN1	Q7Z2K8	1008 aa		11.96	□□□□□ -0.5
MSH6-204	ENST00000445503	CNTD1	Q8N815	330 aa		11.96	□□□□□ -0.5
MSH6-204	ENST00000445503	TXNDC5	Q8NBS9	432 aa	Known RBP	11.96	□□□□□ -0.5
MSH6-204	ENST00000445503	MAGEE2	Q8TD90	523 aa	Predicted RBP	11.96	□□□□□ -0.5
MSH6-204	ENST00000445503	GPR22	Q99680	433 aa		11.96	□□□□□ -0.5
MSH6-204	ENST00000445503	NFKBIZ	Q9BYH8	718 aa		11.96	□□□□□ -0.5
MSH6-204	ENST00000445503	ZBTB26	Q9HCK0	441 aa		11.96	□□□□□ -0.5
MSH6-204	ENST00000445503	CNGB3	Q9NQW8	809 aa		11.96	□□□□□ -0.5
MSH6-204	ENST00000445503	GID8	Q9NWU2	228 aa		11.96	□□□□□ -0.5
MSH6-204	ENST00000445503	DMTF1	Q9Y222	760 aa		11.96	□□□□□ -0.5
MSH6-204	ENST00000445503	NDUFAF1	Q9Y375	327 aa		11.96	□□□□□ -0.5
MSH6-204	ENST00000445503	NRCAM	Q92823	1304 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	FZD9	O00144	591 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	GRID2	O43424	1007 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	PAGE1	O75459	146 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	IPO13	O94829	963 aa	Known RBP	11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	FAS	P25445	335 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	PKDCC	Q504Y2	493 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	DQX1	Q8TE96	717 aa	Known RBP	11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	NCLN	Q969V3	563 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	RPRD1A	Q96P16	312 aa	Predicted RBP	11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	ENTPD7	Q9NQZ7	604 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	UBAP1	Q9NZ09	502 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	PKD2L2	Q9NZM6	624 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	RSL24D1	Q9UHA3	163 aa	Known RBP	11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	PRG3	Q9Y2Y8	225 aa	Predicted RBP	11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	ANGPTL3	Q9Y5C1	460 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	ZNFX1	Q9P2E3	1918 aa	Known RBP	11.95	□□□□□ -0.5
MSH6-204	ENST00000445503		A0A0G2JLL6	359 aa	Predicted RBP	11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	C17orf102	A2RUQ5	167 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	AURKA	O14965	403 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	SLC35E2B	P0CK96	405 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	UGT1A6	P19224	532 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	CD68	P34810	354 aa	Predicted RBP	11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	GRIA2	P42262	883 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	CDKL1	Q00532	357 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	LSAMP	Q13449	338 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	FRG1	Q14331	258 aa	Known RBP	11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	CYS1	Q717R9	158 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	PRRT2	Q7Z6L0	340 aa	Predicted RBP	11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	CBR4	Q8N4T8	237 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	ZFP28	Q8NHY6	868 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	CENPI	Q92674	756 aa	Predicted RBP	11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	C16orf70	Q9BSU1	422 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	ABHD16B	Q9H3Z7	469 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	CPA4	Q9UI42	421 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	RNF112	Q9ULX5	631 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503		A0A087X1B8	175 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	E2F6	O75461	281 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	NDUFS3	O75489	264 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	HGF	P14210	728 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	EPHX2	P34913	555 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	SERPINH1	P50454	418 aa	Known RBP	11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	ADRM1	Q16186	407 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	OGFRL1	Q5TC84	451 aa	Predicted RBP	11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	GRAMD4	Q6IC98	578 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	TAS2R42	Q7RTR8	314 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	TLK2	Q86UE8	772 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	OFCC1	Q8IZS5	231 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	CANT1	Q8WVQ1	401 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	RRN3	Q9NYV6	651 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	PTTG2	Q9NZH5	202 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	VWA7	Q9Y334	891 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	NUP205	Q92621	2012 aa		11.95	□□□□□ -0.5
MSH6-204	ENST00000445503	KIAA1217	Q5T5P2	1943 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	DCLK1	O15075	740 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	CLIC3	O95833	236 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	HSPA1A	P0DMV8	641 aa	Known RBP	11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	HSPA1B	P0DMV9	641 aa	Known RBP	11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	EEF1D	P29692	281 aa	Known RBP	11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	SCNN1B	P51168	640 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	PLCL1	Q15111	1095 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	TAF12	Q16514	161 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	ZNF423	Q2M1K9	1284 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	SGO1	Q5FBB7	561 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	UGT2A3	Q6UWM9	527 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	GPR152	Q8TDT2	470 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	SKA2	Q8WVK7	121 aa	Predicted RBP	11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	KLHL32	Q96NJ5	620 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	TINF2	Q9BSI4	451 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	UNC93B1	Q9H1C4	597 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	PCDHGB4	Q9UN71	923 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	PCDHGB5	Q9Y5G0	923 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	SIX3	O95343	332 aa	Predicted RBP	11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	GSR	P00390	522 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	PGK1	P00558	417 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	OR4Q2	P0C623	313 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	GNAS	Q5JWF2	1037 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	ATG14	Q6ZNE5	492 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	TOP6BL	Q8N6T0	577 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	STYX	Q8WUJ0	223 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	RNF145	Q96MT1	663 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	FAM193B	Q96PV7	902 aa	Predicted RBP	11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	SMO	Q99835	787 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	SLC39A8	Q9C0K1	460 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	TCAF1	Q9Y4C2	921 aa		11.94	□□□□□ -0.5
MSH6-204	ENST00000445503	TIMM22	Q9Y584	194 aa		11.94	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms