RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 DCLRE1AQ6PJP8 1040 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 MARK2Q7KZI7 788 aaKnown RBP8.44□□□□□ -1.06
CD44-208ENST00000428726 TMC7Q7Z402 723 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 ZC3HC1Q86WB0 502 aaKnown RBP8.44□□□□□ -1.06
CD44-208ENST00000428726 SNX32Q86XE0 403 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 CACUL1Q86Y37 369 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 LMNTD2Q8IXW0 634 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 MAB21L3Q8N8X9 362 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 RAB3IL1Q8TBN0 382 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 NTAN1Q96AB6 310 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 PTCD3Q96EY7 689 aaKnown RBP8.44□□□□□ -1.06
CD44-208ENST00000428726 C7orf26Q96N11 449 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 RNF208Q9H0X6 261 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 ABCC13Q9NSE7 274 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 ARHGEF38Q9NXL2 777 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 CCDC167Q9P0B6 97 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 SIRPGQ9P1W8 387 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 SLC7A8Q9UHI5 535 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 LNPEPQ9UIQ6 1025 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 ADAM28Q9UKQ2 775 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 FBXO5Q9UKT4 447 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 ATP11BQ9Y2G3 1177 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 ZFP37Q9Y6Q3 630 aaPredicted RBP8.44□□□□□ -1.06
CD44-208ENST00000428726 G3V2L1 256 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 NRG2O14511 850 aaPredicted RBP8.43□□□□□ -1.06
CD44-208ENST00000428726 ENPP3O14638 875 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 NCAM2O15394 837 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 SH3BGRLO75368 114 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 SLC35E2BP0CK96 405 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 MX2P20592 715 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 YBX1P67809 324 aaKnown RBP8.43□□□□□ -1.06
CD44-208ENST00000428726 KLC1Q07866 573 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 SREBF2Q12772 1141 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 RALGDSQ12967 914 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 GPNMBQ14956 572 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 C18orf21Q32NC0 220 aaPredicted RBP8.43□□□□□ -1.06
CD44-208ENST00000428726 TXNDC8Q6A555 127 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 NEPROQ6NW34 567 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 OTOP2Q7RTS6 562 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 MYLK4Q86YV6 388 aaPredicted RBP8.43□□□□□ -1.06
CD44-208ENST00000428726 COLGALT2Q8IYK4 626 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 CENPLQ8N0S6 344 aaPredicted RBP8.43□□□□□ -1.06
CD44-208ENST00000428726 ACMSDQ8TDX5 336 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 SUSD3Q96L08 255 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 CDK15Q96Q40 435 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 PANX3Q96QZ0 392 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 POMKQ9H5K3 350 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 GPAMQ9HCL2 828 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 THAP1Q9NVV9 213 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 RRN3Q9NYV6 651 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 IGSF9Q9P2J2 1179 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 TIMM22Q9Y584 194 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 COMMD10Q9Y6G5 202 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 BIRC5O15392 142 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 DNAJA2O60884 412 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 GLRA3O75311 464 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 SBK3P0C264 359 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 HCAR3P49019 387 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 LIMK2P53671 638 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 MLLT6P55198 1093 aaPredicted RBP8.43□□□□□ -1.06
CD44-208ENST00000428726 CDKN2DP55273 166 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 SCAPQ12770 1279 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 SEMA3AQ14563 771 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 AAK1Q2M2I8 961 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 TSNAXIP1Q2TAA8 658 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 DEFB115Q30KQ5 88 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 FSCBQ5H9T9 825 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 NADSYN1Q6IA69 706 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 IZUMO2Q6UXV1 221 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 CYP2R1Q6VVX0 501 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 GK5Q6ZS86 529 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 IFNEQ86WN2 208 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 LSRQ86X29 649 aaPredicted RBP8.43□□□□□ -1.06
CD44-208ENST00000428726 CARNMT1Q8N4J0 409 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 ZNF366Q8N895 744 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 TXNDC5Q8NBS9 432 aaKnown RBP8.43□□□□□ -1.06
CD44-208ENST00000428726 LPCAT1Q8NF37 534 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 FAM110BQ8TC76 370 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 PGAP3Q96FM1 320 aaPredicted RBP8.43□□□□□ -1.06
CD44-208ENST00000428726 CASS4Q9NQ75 786 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 SPATS2LQ9NUQ6 558 aaKnown RBP8.43□□□□□ -1.06
CD44-208ENST00000428726 FCF1Q9Y324 198 aaKnown RBP8.43□□□□□ -1.06
CD44-208ENST00000428726 TRIM24O15164 1050 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 PEX1O43933 1283 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 TPST1O60507 370 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 RAMP2O60895 175 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 SEC24AO95486 1093 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 F9P00740 461 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 KLKB1P03952 638 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 ALPIP09923 528 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 ATF6P18850 670 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 CHRM3P20309 590 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 ZNF235Q14590 738 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 DBN1Q16643 649 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 LSM12Q3MHD2 195 aaKnown RBP8.43□□□□□ -1.06
CD44-208ENST00000428726 SLC44A4Q53GD3 710 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 SIRPB2Q5JXA9 342 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 NAPEPLDQ6IQ20 393 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 FUT10Q6P4F1 479 aa8.43□□□□□ -1.06
CD44-208ENST00000428726 TMEM207Q6UWW9 146 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms