RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 RPA3P35244 121 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 CRATP43155 626 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF81P51508 661 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 IRX1P78414 480 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 MADCAM1Q13477 382 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 BTG3Q14201 252 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 FAM98BQ52LJ0 330 aaKnown RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 SH3D19Q5HYK7 790 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 C9orf152Q5JTZ5 239 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 RBM20Q5T481 1227 aaKnown RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 TRIM40Q6P9F5 258 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 ZCCHC12Q6PEW1 402 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 ZER1Q7Z7L7 766 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 STEAP2Q8NFT2 490 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 MFSD8Q8NHS3 518 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 ETNPPLQ8TBG4 499 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 PTCD2Q8WV60 388 aaKnown RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 SLC5A5Q92911 643 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 KIAA1143Q96AT1 154 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 COX4I2Q96KJ9 171 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 WDR77Q9BQA1 342 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF251Q9BRH9 671 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 CNPY3Q9BT09 278 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 NPLQ9BXD5 320 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 OGDHLQ9ULD0 1010 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 RPH3ALQ9UNE2 315 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 ING4Q9UNL4 249 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 TRBV23OR9-2A0A075B6M9 112 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 C1orf232A0A0U1RR37 186 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 BTBD17A6NE02 478 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 CCDC154A6NI56 674 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 ERI2A8K979 691 aaKnown RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 PITPNM1O00562 1244 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 FBXO21O94952 628 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 LTFP02788 710 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 SFTPBP07988 381 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 SLC2A4P14672 509 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF12P17014 697 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 KCNA3P22001 575 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 GARTP22102 1010 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 OR3A3P47888 321 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 OR3A2P47893 321 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 CLCN5P51795 746 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 OXCT1P55809 520 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 RHOAP61586 193 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 GRB2P62993 217 aaKnown RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 GALK2Q01415 458 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 SCRN1Q12765 414 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 DSG2Q14126 1118 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 STAT4Q14765 748 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 FASTKD3Q14CZ7 662 aaKnown RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 SLC39A14Q15043 492 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 DPCR1Q3MIW9 517 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 CYP27C1Q4G0S4 372 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 KCNT1Q5JUK3 1230 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 NIPAL1Q6NVV3 410 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 DENND5BQ6ZUT9 1274 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 MAMDC2Q7Z304 686 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 MIEF2Q96C03 454 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 CBWD1Q9BRT8 395 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 ALG2Q9H553 416 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 ZDHHC6Q9H6R6 413 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 KCND1Q9NSA2 647 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 KCTD5Q9NXV2 234 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 TMPRSS11EQ9UL52 423 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 PCDHA7Q9UN72 937 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 BACE2Q9Y5Z0 518 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 ATRXP46100 2492 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 C2orf74A8MZ97 194 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 EYA2O00167 538 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 FBP2O00757 339 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 F2P00734 622 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 ACO1P21399 889 aaKnown RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 SERPINB5P36952 375 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 RBM34P42696 430 aaKnown RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 DHPSP49366 369 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 PURAQ00577 322 aaKnown RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 XKR3Q5GH77 459 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 PIK3R6Q5UE93 754 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 PARP9Q8IXQ6 854 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 OR52K2Q8NGK3 314 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 NEK9Q8TD19 979 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 EPS8L3Q8TE67 593 aaKnown RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 NXPE2Q96DL1 559 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 ASB2Q96Q27 587 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 TAPBPLQ9BX59 468 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 WDCPQ9H6R7 721 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 NOL11Q9H8H0 719 aaKnown RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 C14orf93Q9H972 538 aaKnown RBP4.67□□□□□ -1.66
SCN1A-202ENST00000375405 IKZF3Q9UKT9 509 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 BAIAP2Q9UQB8 552 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 NEDD4P46934 1319 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 CPED1A4D0V7 1026 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 ANKRD33BA6NCL7 494 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 USP17L3A6NCW0 530 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 USP17L4A6NCW7 530 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF726A6NNF4 738 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 A8MU76 341 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 C9J4A7 227 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms