RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 TRAFD1O14545 582 aaPredicted RBP20.05■□□□□ 0.8
CLN3-205ENST00000359984 HTRA2O43464 458 aaPredicted RBP20.05■□□□□ 0.8
CLN3-205ENST00000359984 FGF1P05230 155 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 CA4P22748 312 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 TNFRSF4P43489 277 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 POU6F1Q14863 301 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 EGFLAMQ63HQ2 1017 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 C3orf62Q6ZUJ4 267 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 TUBGCP5Q96RT8 1024 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 CPEB1Q9BZB8 566 aaKnown RBP20.05■□□□□ 0.8
CLN3-205ENST00000359984 TMEM245Q9H330 911 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 ZDHHC6Q9H6R6 413 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 VIPAS39Q9H9C1 493 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 MYO10Q9HD67 2058 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 K7EQS6 105 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 SHBGP04278 402 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 BMP1P13497 986 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 HLA-EP13747 358 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 TSHRP16473 764 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 PFKPQ01813 784 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 RAD51Q06609 339 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 ARMC12Q5T9G4 340 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 ALS2CLQ60I27 953 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 UNC5AQ6ZN44 842 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 LPCAT1Q8NF37 534 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 ZIM3Q96PE6 472 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 ACOX2Q99424 681 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 ADGRE3Q9BY15 652 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 ZDHHC4Q9NPG8 344 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 SLC2A4RGQ9NR83 387 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 SAMD15Q9P1V8 674 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 PCDHB9Q9Y5E1 797 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 NFS1Q9Y697 457 aa20.05■□□□□ 0.8
CLN3-205ENST00000359984 SOCS5O75159 536 aa20.04■□□□□ 0.8
CLN3-205ENST00000359984 PGLSO95336 258 aa20.04■□□□□ 0.8
CLN3-205ENST00000359984 ABHD2P08910 425 aa20.04■□□□□ 0.8
CLN3-205ENST00000359984 NUDT17P0C025 328 aa20.04■□□□□ 0.8
CLN3-205ENST00000359984 SRFP11831 508 aa20.04■□□□□ 0.8
CLN3-205ENST00000359984 SERPINA4P29622 427 aa20.04■□□□□ 0.8
CLN3-205ENST00000359984 IL12RB1P42701 662 aa20.04■□□□□ 0.8
CLN3-205ENST00000359984 PON2Q15165 354 aa20.04■□□□□ 0.8
CLN3-205ENST00000359984 HNRNPA1L2Q32P51 320 aaKnown RBP20.04■□□□□ 0.8
CLN3-205ENST00000359984 SERPINA13PQ6UXR4 307 aa20.04■□□□□ 0.8
CLN3-205ENST00000359984 CCNJLQ8IV13 435 aa20.04■□□□□ 0.8
CLN3-205ENST00000359984 ADHFE1Q8IWW8 467 aa20.04■□□□□ 0.8
CLN3-205ENST00000359984 OR2W6PQ8NHA6 318 aa20.04■□□□□ 0.8
CLN3-205ENST00000359984 ZBTB9Q96C00 473 aa20.04■□□□□ 0.8
CLN3-205ENST00000359984 RMDN1Q96DB5 314 aa20.04■□□□□ 0.8
CLN3-205ENST00000359984 HEPHQ9BQS7 1158 aa20.04■□□□□ 0.8
CLN3-205ENST00000359984 NAT9Q9BTE0 207 aa20.04■□□□□ 0.8
CLN3-205ENST00000359984 CHRAC1Q9NRG0 131 aa20.04■□□□□ 0.8
CLN3-205ENST00000359984 MUC22E2RYF6 1773 aaPredicted RBP20.04■□□□□ 0.8
CLN3-205ENST00000359984 MAGEB16A2A368 324 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 ALADP13716 330 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 HNRNPLP14866 589 aaKnown RBP eCLIP20.03■□□□□ 0.8
CLN3-205ENST00000359984 PGAM1P18669 254 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 PCID2Q5JVF3 399 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 C9orf64Q5T6V5 341 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 CES3Q6UWW8 571 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 PIH1D2Q8WWB5 315 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 KIFC1Q9BW19 673 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 SUV39H2Q9H5I1 410 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 SOX13Q9UN79 622 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 EDDM13A0A1B0GTR0 161 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 ANKRD66B4E2M5 251 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 PRKCGP05129 697 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 PIRTP0C851 137 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 GLULP15104 373 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 PRKCHP24723 683 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 SLC8A1P32418 973 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 GRM3Q14832 879 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 QPCTQ16769 361 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 TMEM196Q5HYL7 178 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 STEAP4Q687X5 459 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 FSTL4Q6MZW2 842 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 GRIN3AQ8TCU5 1115 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 FCRL3Q96P31 734 aaPredicted RBP20.03■□□□□ 0.8
CLN3-205ENST00000359984 SMIM14Q96QK8 99 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 CACNA2D2Q9NY47 1150 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 TCAF1Q9Y4C2 921 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 WASF2Q9Y6W5 498 aa20.03■□□□□ 0.8
CLN3-205ENST00000359984 ANKRD36A6QL64 1941 aa20.02■□□□□ 0.8
CLN3-205ENST00000359984 A0A087WUV0 522 aaPredicted RBP20.02■□□□□ 0.8
CLN3-205ENST00000359984 FAM237BA0A1B0GVD1 139 aa20.02■□□□□ 0.8
CLN3-205ENST00000359984 EGFP01133 1207 aa20.02■□□□□ 0.8
CLN3-205ENST00000359984 UGT2B4P06133 528 aa20.02■□□□□ 0.8
CLN3-205ENST00000359984 CHRM1P11229 460 aaPredicted RBP20.02■□□□□ 0.8
CLN3-205ENST00000359984 ADRA1DP25100 572 aa20.02■□□□□ 0.8
CLN3-205ENST00000359984 KIR2DL1P43626 348 aaPredicted RBP20.02■□□□□ 0.8
CLN3-205ENST00000359984 SEC13P55735 322 aa20.02■□□□□ 0.8
CLN3-205ENST00000359984 ZP2Q05996 745 aa20.02■□□□□ 0.8
CLN3-205ENST00000359984 SEPT6Q14141 434 aa20.02■□□□□ 0.8
CLN3-205ENST00000359984 SLC44A4Q53GD3 710 aa20.02■□□□□ 0.8
CLN3-205ENST00000359984 ARSIQ5FYB1 569 aa20.02■□□□□ 0.8
CLN3-205ENST00000359984 PKN3Q6P5Z2 889 aa20.02■□□□□ 0.8
CLN3-205ENST00000359984 TMEM135Q86UB9 458 aa20.02■□□□□ 0.8
CLN3-205ENST00000359984 ECHDC3Q96DC8 303 aa20.02■□□□□ 0.8
CLN3-205ENST00000359984 ZNF778Q96MU6 729 aa20.02■□□□□ 0.8
CLN3-205ENST00000359984 ZNF641Q96N77 438 aaPredicted RBP20.02■□□□□ 0.8
CLN3-205ENST00000359984 IL36AQ9UHA7 158 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms