RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 RFTN1Q14699 578 aaPredicted RBP18.56■□□□□ 0.56
CLN3-202ENST00000355477 LBRQ14739 615 aaKnown RBP18.56■□□□□ 0.56
CLN3-202ENST00000355477 GRM3Q14832 879 aa18.56■□□□□ 0.56
CLN3-202ENST00000355477 ST3GAL2Q16842 350 aa18.56■□□□□ 0.56
CLN3-202ENST00000355477 UGP2Q16851 508 aa18.56■□□□□ 0.56
CLN3-202ENST00000355477 CCDC157Q569K6 752 aa18.56■□□□□ 0.56
CLN3-202ENST00000355477 ZNF542PQ5EBM4 170 aa18.56■□□□□ 0.56
CLN3-202ENST00000355477 TPRG1LQ5T0D9 272 aa18.56■□□□□ 0.56
CLN3-202ENST00000355477 KYAT3Q6YP21 454 aaKnown RBP18.56■□□□□ 0.56
CLN3-202ENST00000355477 ZSCAN30Q86W11 494 aa18.56■□□□□ 0.56
CLN3-202ENST00000355477 FAM174AQ8TBP5 190 aa18.56■□□□□ 0.56
CLN3-202ENST00000355477 CNDP2Q96KP4 475 aaKnown RBP18.56■□□□□ 0.56
CLN3-202ENST00000355477 ZNF641Q96N77 438 aaPredicted RBP18.56■□□□□ 0.56
CLN3-202ENST00000355477 TUBGCP5Q96RT8 1024 aa18.56■□□□□ 0.56
CLN3-202ENST00000355477 NHEJ1Q9H9Q4 299 aaPredicted RBP18.56■□□□□ 0.56
CLN3-202ENST00000355477 PCDH12Q9NPG4 1184 aa18.56■□□□□ 0.56
CLN3-202ENST00000355477 SPTLC3Q9NUV7 552 aa18.56■□□□□ 0.56
CLN3-202ENST00000355477 UCKL1Q9NWZ5 548 aa18.56■□□□□ 0.56
CLN3-202ENST00000355477 ENC1O14682 589 aa18.55■□□□□ 0.56
CLN3-202ENST00000355477 FPGTO14772 594 aa18.55■□□□□ 0.56
CLN3-202ENST00000355477 AKR1B10O60218 316 aa18.55■□□□□ 0.56
CLN3-202ENST00000355477 PRKCGP05129 697 aa18.55■□□□□ 0.56
CLN3-202ENST00000355477 PROS1P07225 676 aa18.55■□□□□ 0.56
CLN3-202ENST00000355477 TPM1P09493 284 aa18.55■□□□□ 0.56
CLN3-202ENST00000355477 DGKAP23743 735 aa18.55■□□□□ 0.56
CLN3-202ENST00000355477 SCNN1BP51168 640 aa18.55■□□□□ 0.56
CLN3-202ENST00000355477 DNAJC3Q13217 504 aa18.55■□□□□ 0.56
CLN3-202ENST00000355477 DPYSL3Q14195 570 aa18.55■□□□□ 0.56
CLN3-202ENST00000355477 FZD2Q14332 565 aa18.55■□□□□ 0.56
CLN3-202ENST00000355477 HADHQ16836 314 aaKnown RBP18.55■□□□□ 0.56
CLN3-202ENST00000355477 TSR1Q2NL82 804 aaKnown RBP18.55■□□□□ 0.56
CLN3-202ENST00000355477 TMEM52BQ4KMG9 183 aa18.55■□□□□ 0.56
CLN3-202ENST00000355477 MARCH9Q86YJ5 346 aa18.55■□□□□ 0.56
CLN3-202ENST00000355477 DCP2Q8IU60 420 aaKnown RBP18.55■□□□□ 0.56
CLN3-202ENST00000355477 PGBD5Q8N414 524 aa18.55■□□□□ 0.56
CLN3-202ENST00000355477 CXorf40AQ8TE69 158 aa18.55■□□□□ 0.56
CLN3-202ENST00000355477 ZNF599Q96NL3 588 aa18.55■□□□□ 0.56
CLN3-202ENST00000355477 PSKH2Q96QS6 385 aa18.55■□□□□ 0.56
CLN3-202ENST00000355477 MBNL1Q9NR56 388 aaKnown RBP18.55■□□□□ 0.56
CLN3-202ENST00000355477 SEPT3Q9UH03 358 aa18.55■□□□□ 0.56
CLN3-202ENST00000355477 COQ6Q9Y2Z9 468 aa18.55■□□□□ 0.56
CLN3-202ENST00000355477 DSPP15924 2871 aaKnown RBP18.54■□□□□ 0.56
CLN3-202ENST00000355477 SPTY2D1-AS1A0A0U1RR47 76 aa18.54■□□□□ 0.56
CLN3-202ENST00000355477 TRIM38O00635 465 aa18.54■□□□□ 0.56
CLN3-202ENST00000355477 RIOK3O14730 519 aaKnown RBP18.54■□□□□ 0.56
CLN3-202ENST00000355477 TM7SF2O76062 418 aa18.54■□□□□ 0.56
CLN3-202ENST00000355477 TMEM253P0C7T8 217 aa18.54■□□□□ 0.56
CLN3-202ENST00000355477 XPAP23025 273 aaPredicted RBP18.54■□□□□ 0.56
CLN3-202ENST00000355477 IGFALSP35858 605 aa18.54■□□□□ 0.56
CLN3-202ENST00000355477 GJC1P36383 396 aa18.54■□□□□ 0.56
CLN3-202ENST00000355477 RABIFP47224 123 aa18.54■□□□□ 0.56
CLN3-202ENST00000355477 SUOXP51687 545 aa18.54■□□□□ 0.56
CLN3-202ENST00000355477 PFN3P60673 137 aa18.54■□□□□ 0.56
CLN3-202ENST00000355477 TMCO4Q5TGY1 634 aa18.54■□□□□ 0.56
CLN3-202ENST00000355477 BRAT1Q6PJG6 821 aa18.54■□□□□ 0.56
CLN3-202ENST00000355477 DENND6BQ8NEG7 585 aa18.54■□□□□ 0.56
CLN3-202ENST00000355477 PCDH19Q8TAB3 1148 aa18.54■□□□□ 0.56
CLN3-202ENST00000355477 SLC35G2Q8TBE7 412 aa18.54■□□□□ 0.56
CLN3-202ENST00000355477 ECHDC3Q96DC8 303 aa18.54■□□□□ 0.56
CLN3-202ENST00000355477 ATP13A3Q9H7F0 1226 aa18.54■□□□□ 0.56
CLN3-202ENST00000355477 RCOR3Q9P2K3 495 aaPredicted RBP18.54■□□□□ 0.56
CLN3-202ENST00000355477 KLF15Q9UIH9 416 aa18.54■□□□□ 0.56
CLN3-202ENST00000355477 CHD6Q8TD26 2715 aa18.53■□□□□ 0.56
CLN3-202ENST00000355477 TMEM110-MUSTN1A8MSY1 372 aa18.53■□□□□ 0.56
CLN3-202ENST00000355477 PIAS2O75928 621 aa18.53■□□□□ 0.56
CLN3-202ENST00000355477 GIMD1P0DJR0 217 aa18.53■□□□□ 0.56
CLN3-202ENST00000355477 SERPINA4P29622 427 aa18.53■□□□□ 0.56
CLN3-202ENST00000355477 ELP6Q0PNE2 266 aa18.53■□□□□ 0.56
CLN3-202ENST00000355477 PDE1CQ14123 709 aaPredicted RBP18.53■□□□□ 0.56
CLN3-202ENST00000355477 SARM1Q6SZW1 724 aa18.53■□□□□ 0.56
CLN3-202ENST00000355477 CCNI2Q6ZMN8 369 aaPredicted RBP18.53■□□□□ 0.56
CLN3-202ENST00000355477 TMPRSS7Q7RTY8 843 aa18.53■□□□□ 0.56
CLN3-202ENST00000355477 TP53I13Q8NBR0 393 aaPredicted RBP18.53■□□□□ 0.56
CLN3-202ENST00000355477 KCTD6Q8NC69 237 aa18.53■□□□□ 0.56
CLN3-202ENST00000355477 IFT43Q96FT9 208 aa18.53■□□□□ 0.56
CLN3-202ENST00000355477 CCDC42Q96M95 316 aa18.53■□□□□ 0.56
CLN3-202ENST00000355477 DNAJC28Q9NX36 388 aa18.53■□□□□ 0.56
CLN3-202ENST00000355477 ASXL3Q9C0F0 2248 aa18.53■□□□□ 0.56
CLN3-202ENST00000355477 AKR1B15C9JRZ8 316 aaPredicted RBP18.52■□□□□ 0.56
CLN3-202ENST00000355477 TRAFD1O14545 582 aaPredicted RBP18.52■□□□□ 0.56
CLN3-202ENST00000355477 SIGLEC6O43699 453 aa18.52■□□□□ 0.56
CLN3-202ENST00000355477 MFSD11O43934 449 aa18.52■□□□□ 0.56
CLN3-202ENST00000355477 CR2P20023 1033 aa18.52■□□□□ 0.56
CLN3-202ENST00000355477 SERPINB6P35237 376 aa18.52■□□□□ 0.56
CLN3-202ENST00000355477 MMP12P39900 470 aa18.52■□□□□ 0.56
CLN3-202ENST00000355477 RENBPP51606 427 aa18.52■□□□□ 0.56
CLN3-202ENST00000355477 BCL2L1Q07817 233 aa18.52■□□□□ 0.56
CLN3-202ENST00000355477 MESDQ14696 234 aa18.52■□□□□ 0.56
CLN3-202ENST00000355477 ANKRD20A8PQ5CZ79 823 aa18.52■□□□□ 0.56
CLN3-202ENST00000355477 CFAP58Q5T655 872 aa18.52■□□□□ 0.56
CLN3-202ENST00000355477 DHRS13Q6UX07 377 aa18.52■□□□□ 0.56
CLN3-202ENST00000355477 ATPAF2Q8N5M1 289 aa18.52■□□□□ 0.56
CLN3-202ENST00000355477 TRIM5Q9C035 493 aa18.52■□□□□ 0.56
CLN3-202ENST00000355477 ATP8A1Q9Y2Q0 1164 aa18.52■□□□□ 0.56
CLN3-202ENST00000355477 LRP4O75096 1905 aa18.52■□□□□ 0.56
CLN3-202ENST00000355477 FFAR2O15552 330 aa18.51■□□□□ 0.55
CLN3-202ENST00000355477 MAP3K6O95382 1288 aa18.51■□□□□ 0.55
CLN3-202ENST00000355477 CSF2P04141 144 aa18.51■□□□□ 0.55
CLN3-202ENST00000355477 C6P13671 934 aa18.51■□□□□ 0.55
CLN3-202ENST00000355477 ACADVLP49748 655 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms