RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 PCSK9Q8NBP7 692 aaKnown RBP21.96■■□□□ 1.11
SHMT1-202ENST00000352886 ATAD1Q8NBU5 361 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 OR13J1Q8NGT2 312 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 RP9Q8TA86 221 aaKnown RBP21.96■■□□□ 1.11
SHMT1-202ENST00000352886 MARK4Q96L34 752 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 ZNF385DQ9H6B1 395 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 CAMSAP3Q9P1Y5 1249 aaPredicted RBP21.96■■□□□ 1.11
SHMT1-202ENST00000352886 PCDHB5Q9Y5E4 795 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 CKBP12277 381 aa21.95■■□□□ 1.1
SHMT1-202ENST00000352886 ELNP15502 786 aa21.95■■□□□ 1.1
SHMT1-202ENST00000352886 ATP5F1P24539 256 aaPredicted RBP21.95■■□□□ 1.1
SHMT1-202ENST00000352886 CST5P28325 142 aaPredicted RBP21.95■■□□□ 1.1
SHMT1-202ENST00000352886 CYLC2Q14093 348 aaPredicted RBP21.95■■□□□ 1.1
SHMT1-202ENST00000352886 SH2D4BQ5SQS7 431 aa21.95■■□□□ 1.1
SHMT1-202ENST00000352886 PIWIL4Q7Z3Z4 852 aaKnown RBP21.95■■□□□ 1.1
SHMT1-202ENST00000352886 LINC01599Q8WXQ3 324 aa21.95■■□□□ 1.1
SHMT1-202ENST00000352886 IGSF8Q969P0 613 aa21.95■■□□□ 1.1
SHMT1-202ENST00000352886 RANBP9Q96S59 729 aa21.95■■□□□ 1.1
SHMT1-202ENST00000352886 CCDC28BQ9BUN5 200 aa21.95■■□□□ 1.1
SHMT1-202ENST00000352886 DLGAP2Q9P1A6 1054 aa21.95■■□□□ 1.1
SHMT1-202ENST00000352886 PACSIN3Q9UKS6 424 aa21.95■■□□□ 1.1
SHMT1-202ENST00000352886 LINGO3P0C6S8 592 aa21.95■■□□□ 1.1
SHMT1-202ENST00000352886 LEPRP48357 1165 aaKnown RBP21.95■■□□□ 1.1
SHMT1-202ENST00000352886 MSLNQ13421 630 aaPredicted RBP21.95■■□□□ 1.1
SHMT1-202ENST00000352886 FAM83EQ2M2I3 478 aa21.95■■□□□ 1.1
SHMT1-202ENST00000352886 RAP1GAP2Q684P5 730 aa21.95■■□□□ 1.1
SHMT1-202ENST00000352886 PTAR1Q7Z6K3 402 aaPredicted RBP21.95■■□□□ 1.1
SHMT1-202ENST00000352886 ATP6V0D2Q8N8Y2 350 aa21.95■■□□□ 1.1
SHMT1-202ENST00000352886 STON2Q8WXE9 905 aa21.95■■□□□ 1.1
SHMT1-202ENST00000352886 FATE1Q969F0 183 aa21.95■■□□□ 1.1
SHMT1-202ENST00000352886 TADA2AO75478 443 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 SOAT2O75908 522 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 HNRNPLP14866 589 aaKnown RBP eCLIP21.94■■□□□ 1.1
SHMT1-202ENST00000352886 MBTPS1Q14703 1052 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 LBRQ14739 615 aaKnown RBP21.94■■□□□ 1.1
SHMT1-202ENST00000352886 TECRLQ5HYJ1 363 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 FBXL22Q6P050 247 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 KYQ8NBH2 561 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 GABPB2Q8TAK5 448 aaPredicted RBP21.94■■□□□ 1.1
SHMT1-202ENST00000352886 BTN2A3PQ96KV6 586 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 CYP4F12Q9HCS2 524 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 IGLV3-10A0A075B6K4 115 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 CCL22O00626 93 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 SLC22A2O15244 555 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 CLCN5P51795 746 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 DNAJB13P59910 316 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 LRRC36Q1X8D7 754 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 CTXN3Q4LDR2 81 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 C16orf89Q6UX73 402 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 CILP2Q8IUL8 1156 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 DSELQ8IZU8 1212 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 FBXO32Q969P5 355 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 FAM193BQ96PV7 902 aaPredicted RBP21.94■■□□□ 1.1
SHMT1-202ENST00000352886 GTSE1Q9NYZ3 720 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 ADAMTS6Q9UKP5 1117 aa21.94■■□□□ 1.1
SHMT1-202ENST00000352886 HMBSP08397 361 aa21.93■■□□□ 1.1
SHMT1-202ENST00000352886 ETFBP38117 255 aa21.93■■□□□ 1.1
SHMT1-202ENST00000352886 AGAP9Q5VTM2 703 aa21.93■■□□□ 1.1
SHMT1-202ENST00000352886 LDB1Q86U70 411 aaPredicted RBP21.93■■□□□ 1.1
SHMT1-202ENST00000352886 CIR1Q86X95 450 aaPredicted RBP21.93■■□□□ 1.1
SHMT1-202ENST00000352886 OR6P1Q8NGX9 317 aa21.93■■□□□ 1.1
SHMT1-202ENST00000352886 RCN3Q96D15 328 aa21.93■■□□□ 1.1
SHMT1-202ENST00000352886 VCXQ9H320 206 aa21.93■■□□□ 1.1
SHMT1-202ENST00000352886 UXTQ9UBK9 157 aaPredicted RBP21.93■■□□□ 1.1
SHMT1-202ENST00000352886 PAPSS2O95340 614 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-202ENST00000352886 CCDC166P0CW27 439 aa21.92■■□□□ 1.1
SHMT1-202ENST00000352886 KCNA5P22460 613 aa21.92■■□□□ 1.1
SHMT1-202ENST00000352886 YWHAQP27348 245 aa21.92■■□□□ 1.1
SHMT1-202ENST00000352886 ADSLP30566 484 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-202ENST00000352886 CAP1Q01518 475 aa21.92■■□□□ 1.1
SHMT1-202ENST00000352886 SIRPB2Q5JXA9 342 aa21.92■■□□□ 1.1
SHMT1-202ENST00000352886 ARMC3Q5W041 872 aa21.92■■□□□ 1.1
SHMT1-202ENST00000352886 SETD3Q86TU7 594 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-202ENST00000352886 PGBD5Q8N414 524 aa21.92■■□□□ 1.1
SHMT1-202ENST00000352886 TEX26Q8N6G2 289 aa21.92■■□□□ 1.1
SHMT1-202ENST00000352886 GATA6Q92908 595 aa21.92■■□□□ 1.1
SHMT1-202ENST00000352886 B3GALT6Q96L58 329 aa21.92■■□□□ 1.1
SHMT1-202ENST00000352886 ZBTB26Q9HCK0 441 aa21.92■■□□□ 1.1
SHMT1-202ENST00000352886 SCOCQ9UIL1 159 aa21.92■■□□□ 1.1
SHMT1-202ENST00000352886 PRPF19Q9UMS4 504 aaKnown RBP21.92■■□□□ 1.1
SHMT1-202ENST00000352886 FIS1Q9Y3D6 152 aa21.92■■□□□ 1.1
SHMT1-202ENST00000352886 LTA4HP09960 611 aaKnown RBP21.92■■□□□ 1.1
SHMT1-202ENST00000352886 RAG1P15918 1043 aa21.92■■□□□ 1.1
SHMT1-202ENST00000352886 SP100P23497 879 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-202ENST00000352886 ARPP19P56211 112 aa21.92■■□□□ 1.1
SHMT1-202ENST00000352886 TRIP4Q15650 581 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-202ENST00000352886 HECTD2Q5U5R9 776 aa21.92■■□□□ 1.1
SHMT1-202ENST00000352886 LPCAT4Q643R3 524 aa21.92■■□□□ 1.1
SHMT1-202ENST00000352886 SUDS3Q9H7L9 328 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-202ENST00000352886 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.92■■□□□ 1.1
SHMT1-202ENST00000352886 MARCH2Q9P0N8 246 aa21.92■■□□□ 1.1
SHMT1-202ENST00000352886 COPG1Q9Y678 874 aaKnown RBP21.92■■□□□ 1.1
SHMT1-202ENST00000352886 MROH6A6NGR9 719 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 TMEM88BA6NKF7 163 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 TRPC5OSA6NMA1 111 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 A8MT66 165 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 MAGEA11P43364 429 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 ARSDP51689 593 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 ACLYP53396 1101 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 PFKPQ01813 784 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms