RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 CCNT2O60583 730 aaKnown RBP19.51■□□□□ 0.71
COL9A3-201ENST00000343916 HNRNPLP14866 589 aaKnown RBP eCLIP19.51■□□□□ 0.71
COL9A3-201ENST00000343916 YWHAQP27348 245 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 PBX3P40426 434 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 ARSDP51689 593 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 MSLNQ13421 630 aaPredicted RBP19.51■□□□□ 0.71
COL9A3-201ENST00000343916 SLC26A7Q8TE54 656 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 GLT1D1Q96MS3 346 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 RPRD1AQ96P16 312 aaPredicted RBP19.51■□□□□ 0.71
COL9A3-201ENST00000343916 CATSPER2Q96P56 530 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 POMKQ9H5K3 350 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 ARNT2Q9HBZ2 717 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 ATP13A1Q9HD20 1204 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19.51■□□□□ 0.71
COL9A3-201ENST00000343916 MARCH2Q9P0N8 246 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 UXTQ9UBK9 157 aaPredicted RBP19.51■□□□□ 0.71
COL9A3-201ENST00000343916 ARHGAP26Q9UNA1 814 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 FIS1Q9Y3D6 152 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 KCNA5P22460 613 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 PIK3R1P27986 724 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 MGAT5BQ3V5L5 792 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 CMPK2Q5EBM0 449 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 FAM219BQ5XKK7 198 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 LCA5Q86VQ0 697 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 FAM136AQ96C01 138 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 BTN2A3PQ96KV6 586 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 IGSF5Q9NSI5 407 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 NDE1Q9NXR1 346 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 DLGAP2Q9P1A6 1054 aa19.51■□□□□ 0.71
COL9A3-201ENST00000343916 SLC12A8A0AV02 714 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 ACVRL1P37023 503 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 PLK1P53350 603 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 POU4F1Q01851 419 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 BTKQ06187 659 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 CCNIQ14094 377 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 RSPO2Q6UXX9 243 aaPredicted RBP19.5■□□□□ 0.71
COL9A3-201ENST00000343916 SNX32Q86XE0 403 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 ATP6V0D2Q8N8Y2 350 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 OR6P1Q8NGX9 317 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 SUDS3Q9H7L9 328 aaPredicted RBP19.5■□□□□ 0.71
COL9A3-201ENST00000343916 POMPQ9Y244 141 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 THSD7BQ9C0I4 1608 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 NT5C1B-RDH14C9J2C7 533 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 BUD23O43709 281 aaKnown RBP19.5■□□□□ 0.71
COL9A3-201ENST00000343916 NUDT2P50583 147 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 FAM189BP81408 668 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 NSUN2Q08J23 767 aaKnown RBP eCLIP19.5■□□□□ 0.71
COL9A3-201ENST00000343916 POLD3Q15054 466 aaPredicted RBP19.5■□□□□ 0.71
COL9A3-201ENST00000343916 SH2D4BQ5SQS7 431 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 RNF111Q6ZNA4 994 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 TRIM67Q6ZTA4 783 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 SH3RF2Q8TEC5 729 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 ZNF184Q99676 751 aaPredicted RBP19.5■□□□□ 0.71
COL9A3-201ENST00000343916 MRPL57Q9BQC6 102 aaKnown RBP19.5■□□□□ 0.71
COL9A3-201ENST00000343916 CCSER2Q9H7U1 834 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 PLXNA3P51805 1871 aa19.5■□□□□ 0.71
COL9A3-201ENST00000343916 IGLV3-10A0A075B6K4 115 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 POLD2P49005 469 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 PTPRCAPQ14761 206 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 SIRPB2Q5JXA9 342 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 ACAD11Q709F0 780 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 ARHGAP18Q8N392 663 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 KDM1BQ8NB78 822 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 ARRDC2Q8TBH0 407 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 ANKRD49Q8WVL7 239 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 HDAC10Q969S8 669 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 RTKNQ9BST9 563 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 GPAMQ9HCL2 828 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 S100A14Q9HCY8 104 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 MARCH4Q9P2E8 410 aaPredicted RBP19.49■□□□□ 0.71
COL9A3-201ENST00000343916 CDYLQ9Y232 598 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 LRCH1Q9Y2L9 728 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 A0A087X1B8 175 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 RAMP2O60895 175 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 CCDC166P0CW27 439 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 ARSAP15289 507 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 OR1E1P30953 314 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 PRKAA2P54646 552 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 TRIP4Q15650 581 aaPredicted RBP19.49■□□□□ 0.71
COL9A3-201ENST00000343916 LRRC36Q1X8D7 754 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 MAP3K21Q5TCX8 1036 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 TMCO4Q5TGY1 634 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 CILP2Q8IUL8 1156 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 FBXW8Q8N3Y1 598 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 VPS45Q9NRW7 570 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 CLIC5Q9NZA1 410 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 NCKIPSDQ9NZQ3 722 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 FNIP2Q9P278 1114 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 ACTL7AQ9Y615 435 aa19.49■□□□□ 0.71
COL9A3-201ENST00000343916 SYN3O14994 580 aa19.48■□□□□ 0.71
COL9A3-201ENST00000343916 MUSKO15146 869 aa19.48■□□□□ 0.71
COL9A3-201ENST00000343916 SMIM24O75264 130 aa19.48■□□□□ 0.71
COL9A3-201ENST00000343916 SP100P23497 879 aaPredicted RBP19.48■□□□□ 0.71
COL9A3-201ENST00000343916 PRDX6P30041 224 aa19.48■□□□□ 0.71
COL9A3-201ENST00000343916 LEPRP48357 1165 aaKnown RBP19.48■□□□□ 0.71
COL9A3-201ENST00000343916 ASPHQ12797 758 aa19.48■□□□□ 0.71
COL9A3-201ENST00000343916 IZUMO2Q6UXV1 221 aa19.48■□□□□ 0.71
COL9A3-201ENST00000343916 RNF19BQ6ZMZ0 732 aa19.48■□□□□ 0.71
COL9A3-201ENST00000343916 CFAP52Q8N1V2 620 aa19.48■□□□□ 0.71
COL9A3-201ENST00000343916 GTSE1Q9NYZ3 720 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms