RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 DHRS4L1P0CG22 281 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 DDX6P26196 483 aaKnown RBP eCLIP18.57■□□□□ 0.565e-6■■■■■ 34.8
USP39-201ENST00000323701 LIMK2P53671 638 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 IL9RQ01113 521 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 ARHGAP15Q53QZ3 475 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 GRTP1Q5TC63 336 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 HHATQ5VTY9 493 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 MFSD6LQ8IWD5 586 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 PTPRN2Q92932 1015 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 RSPRY1Q96DX4 576 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 RPL10LQ96L21 214 aaKnown RBP18.57■□□□□ 0.56
USP39-201ENST00000323701 NUDCD1Q96RS6 583 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 RANBP9Q96S59 729 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 TDRD1Q9BXT4 1180 aaKnown RBP18.57■□□□□ 0.56
USP39-201ENST00000323701 TM6SF2Q9BZW4 377 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 SUDS3Q9H7L9 328 aaPredicted RBP18.57■□□□□ 0.56
USP39-201ENST00000323701 SLCO1B3Q9NPD5 702 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 ABCB8Q9NUT2 735 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 TXNDC16Q9P2K2 825 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 WNT6Q9Y6F9 365 aa18.57■□□□□ 0.56
USP39-201ENST00000323701 OR51F1A6NGY5 319 aa18.56■□□□□ 0.56
USP39-201ENST00000323701 VGLL3A8MV65 326 aa18.56■□□□□ 0.56
USP39-201ENST00000323701 ANKRD65E5RJM6 399 aa18.56■□□□□ 0.56
USP39-201ENST00000323701 TRIM24O15164 1050 aa18.56■□□□□ 0.56
USP39-201ENST00000323701 TM9SF1O15321 606 aa18.56■□□□□ 0.56
USP39-201ENST00000323701 FGF19O95750 216 aa18.56■□□□□ 0.56
USP39-201ENST00000323701 EPOP01588 193 aa18.56■□□□□ 0.56
USP39-201ENST00000323701 CNTFP26441 200 aa18.56■□□□□ 0.56
USP39-201ENST00000323701 SLC1A2P43004 574 aa18.56■□□□□ 0.56
USP39-201ENST00000323701 PDE1BQ01064 536 aa18.56■□□□□ 0.56
USP39-201ENST00000323701 TRAF2Q12933 501 aa18.56■□□□□ 0.56
USP39-201ENST00000323701 DNAJC3Q13217 504 aa18.56■□□□□ 0.56
USP39-201ENST00000323701 PLEKHG6Q3KR16 790 aa18.56■□□□□ 0.56
USP39-201ENST00000323701 ZNF789Q5FWF6 425 aa18.56■□□□□ 0.56
USP39-201ENST00000323701 CGB2Q6NT52 195 aa18.56■□□□□ 0.56
USP39-201ENST00000323701 CNTN4Q8IWV2 1026 aa18.56■□□□□ 0.56
USP39-201ENST00000323701 MYLIPQ8WY64 445 aa18.56■□□□□ 0.56
USP39-201ENST00000323701 SMG7Q92540 1137 aaKnown RBP18.56■□□□□ 0.56
USP39-201ENST00000323701 PLLPQ9Y342 182 aa18.56■□□□□ 0.56
USP39-201ENST00000323701 RAI2Q9Y5P3 530 aa18.56■□□□□ 0.56
USP39-201ENST00000323701 NEDD8-MDP1E9PL57 170 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 ZNF821O75541 412 aaPredicted RBP18.55■□□□□ 0.56
USP39-201ENST00000323701 NDST3O95803 873 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 GKP32189 559 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 STK19P49842 368 aaPredicted RBP18.55■□□□□ 0.56
USP39-201ENST00000323701 INO80DQ53TQ3 878 aaPredicted RBP18.55■□□□□ 0.56
USP39-201ENST00000323701 KIAA0930Q6ICG6 404 aaPredicted RBP18.55■□□□□ 0.56
USP39-201ENST00000323701 FAM47EQ6ZV65 393 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 ZC3HC1Q86WB0 502 aaKnown RBP18.55■□□□□ 0.56
USP39-201ENST00000323701 VPS39Q96JC1 886 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 SAMD11Q96NU1 681 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 APOL5Q9BWW9 433 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 MRPS23Q9Y3D9 190 aaKnown RBP18.55■□□□□ 0.56
USP39-201ENST00000323701 PRUNE2Q8WUY3 3088 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 C2orf16Q68DN1 1984 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 FGF1P05230 155 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 HLA-DPA1P20036 260 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 SLC8A1P32418 973 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 RHOAP61586 193 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 TMPRSS15P98073 1019 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 KCNC3Q14003 757 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 GRM3Q14832 879 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 PDK4Q16654 411 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 ZNF470Q6ECI4 717 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 PDE12Q6L8Q7 609 aaKnown RBP18.55■□□□□ 0.56
USP39-201ENST00000323701 C16orf46Q6P387 395 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 NCEH1Q6PIU2 408 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 MECRQ9BV79 373 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 SNX15Q9NRS6 342 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 ZNF358Q9NW07 568 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 EMCNQ9ULC0 261 aa18.55■□□□□ 0.56
USP39-201ENST00000323701 SPRP35270 261 aaPredicted RBP18.54■□□□□ 0.56
USP39-201ENST00000323701 DUSP6Q16828 381 aa18.54■□□□□ 0.56
USP39-201ENST00000323701 FUT11Q495W5 492 aa18.54■□□□□ 0.56
USP39-201ENST00000323701 PPP2R2DQ66LE6 453 aa18.54■□□□□ 0.56
USP39-201ENST00000323701 LDB1Q86U70 411 aaPredicted RBP18.54■□□□□ 0.56
USP39-201ENST00000323701 C10orf67Q8IYJ2 551 aa18.54■□□□□ 0.56
USP39-201ENST00000323701 MDGA1Q8NFP4 955 aa18.54■□□□□ 0.56
USP39-201ENST00000323701 OR13C4Q8NGS5 318 aa18.54■□□□□ 0.56
USP39-201ENST00000323701 HDAC10Q969S8 669 aa18.54■□□□□ 0.56
USP39-201ENST00000323701 VOPP1Q96AW1 172 aa18.54■□□□□ 0.56
USP39-201ENST00000323701 DNAJC1Q96KC8 554 aaKnown RBP18.54■□□□□ 0.56
USP39-201ENST00000323701 ELAC2Q9BQ52 826 aaKnown RBP18.54■□□□□ 0.56
USP39-201ENST00000323701 C2orf49Q9BVC5 232 aaPredicted RBP18.54■□□□□ 0.56
USP39-201ENST00000323701 MARCH4Q9P2E8 410 aaPredicted RBP18.54■□□□□ 0.56
USP39-201ENST00000323701 PENKP01210 267 aaPredicted RBP18.54■□□□□ 0.56
USP39-201ENST00000323701 MAGEA12P43365 314 aa18.54■□□□□ 0.56
USP39-201ENST00000323701 USP4Q13107 963 aa18.54■□□□□ 0.56
USP39-201ENST00000323701 DGKKQ5KSL6 1271 aa18.54■□□□□ 0.56
USP39-201ENST00000323701 LY6G5CQ5SRR4 150 aa18.54■□□□□ 0.56
USP39-201ENST00000323701 CES4AQ5XG92 561 aa18.54■□□□□ 0.56
USP39-201ENST00000323701 NEPROQ6NW34 567 aa18.54■□□□□ 0.56
USP39-201ENST00000323701 PIGWQ7Z7B1 504 aa18.54■□□□□ 0.56
USP39-201ENST00000323701 ADGRG2Q8IZP9 1017 aa18.54■□□□□ 0.56
USP39-201ENST00000323701 PLD6Q8N2A8 252 aaKnown RBP18.54■□□□□ 0.56
USP39-201ENST00000323701 LEMD2Q8NC56 503 aa18.54■□□□□ 0.56
USP39-201ENST00000323701 ARMC2Q8NEN0 867 aa18.54■□□□□ 0.56
USP39-201ENST00000323701 LPCAT1Q8NF37 534 aa18.54■□□□□ 0.56
USP39-201ENST00000323701 PDCD6IPQ8WUM4 868 aaKnown RBP18.54■□□□□ 0.56
USP39-201ENST00000323701 IRF7Q92985 503 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms