RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 GTSE1Q9NYZ3 720 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 MARCH2Q9P0N8 246 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 CDYLQ9Y232 598 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 LRCH1Q9Y2L9 728 aa18.5■□□□□ 0.55
SHKBP1-201ENST00000291842 CCDC166P0CW27 439 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 ACVRL1P37023 503 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 PBX3P40426 434 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 TM4SF4P48230 202 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 POU4F1Q01851 419 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 ZRSR2Q15696 482 aaKnown RBP18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 MGAT5BQ3V5L5 792 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 HDAC10Q969S8 669 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 SPDL1Q96EA4 605 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 FUBP3Q96I24 572 aaKnown RBP eCLIP18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 MRPL57Q9BQC6 102 aaKnown RBP18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 DOCK4Q8N1I0 1966 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 NT5C1B-RDH14C9J2C7 533 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 CST5P28325 142 aaPredicted RBP18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 MSX2P35548 267 aaPredicted RBP18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 BTKQ06187 659 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 ASPHQ12797 758 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 MSLNQ13421 630 aaPredicted RBP18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 POLD3Q15054 466 aaPredicted RBP18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 SIRPB2Q5JXA9 342 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 TMEM154Q6P9G4 183 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 RSPO2Q6UXX9 243 aaPredicted RBP18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 RNF180Q86T96 592 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 LCA5Q86VQ0 697 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 ATP6V0D2Q8N8Y2 350 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 ANKRD49Q8WVL7 239 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 PHF21BQ96EK2 531 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 ARNT2Q9HBZ2 717 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 ATP13A1Q9HD20 1204 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 ACTL7AQ9Y615 435 aa18.49■□□□□ 0.55
SHKBP1-201ENST00000291842 A0A087X1B8 175 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 DPPA5A6NC42 116 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 FKBP6O75344 327 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 PRDX6P30041 224 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 PRKAA2P54646 552 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 NSUN2Q08J23 767 aaKnown RBP eCLIP18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 CAPRIN2Q6IMN6 1127 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 CFAP52Q8N1V2 620 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 KDM1BQ8NB78 822 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 BTN2A3PQ96KV6 586 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 CCSER2Q9H7U1 834 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 MARCH4Q9P2E8 410 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 CRYL1Q9Y2S2 319 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 TLL2Q9Y6L7 1015 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 VWA8A3KMH1 1905 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 LIN7AO14910 233 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 PIRTP0C851 137 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 THRAP10827 490 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 OR1E1P30953 314 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 POLD2P49005 469 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 ARRDC2Q8TBH0 407 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 GIPC2Q8TF65 315 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 RCN3Q96D15 328 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 TNFRSF12AQ9NP84 129 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 CLIC5Q9NZA1 410 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 NCKIPSDQ9NZQ3 722 aa18.48■□□□□ 0.55
SHKBP1-201ENST00000291842 RGSL1A5PLK6 1076 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 A6NHS1 94 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 RAMP2O60895 175 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 PPARGP37231 505 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 CYLC2Q14093 348 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 FAM83EQ2M2I3 478 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 LPCAT4Q643R3 524 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 PIM3Q86V86 326 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 CILP2Q8IUL8 1156 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 ARHGAP18Q8N392 663 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 GLT1D1Q96MS3 346 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 ADAMTS6Q9UKP5 1117 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 CORO1CQ9ULV4 474 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 TMEM189-UBE2V1I3L0A0 370 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 MUSKO15146 869 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 CFLARO15519 480 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 SLC4A1P02730 911 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 ATP5F1P24539 256 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 LEPRP48357 1165 aaKnown RBP18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 MTTPP55157 894 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 CDKN2DP55273 166 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 PRAMEP78395 509 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 TRIP4Q15650 581 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 TECRLQ5HYJ1 363 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 HECTD2Q5U5R9 776 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 RNF19BQ6ZMZ0 732 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 DSELQ8IZU8 1212 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 RNF148Q8N7C7 305 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 SEMA3CQ99985 751 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 DLGAP2Q9P1A6 1054 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 VTI1BQ9UEU0 232 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 ARL5AQ9Y689 179 aa18.47■□□□□ 0.55
SHKBP1-201ENST00000291842 FRMPD3Q5JV73 1810 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 IGLV3-10A0A075B6K4 115 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 TSPAN8P19075 237 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 KCNQ1P51787 676 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 FAM189BP81408 668 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 DSG1Q02413 1049 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 GALNT3Q14435 633 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms