RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 PGM3O95394 542 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 WNT3AP56704 352 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 COPZ1P61923 177 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 USP46P62068 366 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 GNA13Q14344 377 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 SPANXN2Q5MJ10 180 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 CDC73Q6P1J9 531 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 ANKS1BQ7Z6G8 1248 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 C2orf73Q8N5S3 287 aaPredicted RBP11.53□□□□□ -0.56
USP53-201ENST00000274030 LINGO1Q96FE5 620 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 PNPOQ9NVS9 261 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 MORF4L1Q9UBU8 362 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 ISM1B1AKI9 464 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 ADCY6O43306 1168 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 CHPFQ8IZ52 775 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 SIX5Q8N196 739 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 OR10G6Q8NH81 332 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 MMADHCQ9H3L0 296 aaPredicted RBP11.53□□□□□ -0.56
USP53-201ENST00000274030 AASDHPPTQ9NRN7 309 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 RIPK3Q9Y572 518 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 CD3EAPO15446 510 aaKnown RBP11.53□□□□□ -0.56
USP53-201ENST00000274030 RECQL5O94762 991 aaPredicted RBP11.53□□□□□ -0.56
USP53-201ENST00000274030 NELFEP18615 380 aaKnown RBP11.53□□□□□ -0.56
USP53-201ENST00000274030 TKTP29401 623 aaKnown RBP11.53□□□□□ -0.56
USP53-201ENST00000274030 CRYBB1P53674 252 aaPredicted RBP11.53□□□□□ -0.56
USP53-201ENST00000274030 CDK18Q07002 472 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 INO80DQ53TQ3 878 aaPredicted RBP11.53□□□□□ -0.56
USP53-201ENST00000274030 GPRIN3Q6ZVF9 776 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 SLC9A9Q8IVB4 645 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 ENKURQ8TC29 256 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 SLC17A7Q9P2U7 560 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 PSME2Q9UL46 239 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 ZMYM2Q9UBW7 1377 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 SLC15A5A6NIM6 579 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 PAGE1O75459 146 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 KLHL18O94889 574 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 MC4RP32245 332 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 IFNGR2P38484 337 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 SRP54P61011 504 aaKnown RBP11.53□□□□□ -0.56
USP53-201ENST00000274030 CCNIQ14094 377 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 CLYBLQ8N0X4 340 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 KREMEN1Q96MU8 473 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 VPS35Q96QK1 796 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 DUSP16Q9BY84 665 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 A0A088AWK7 358 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 SGTAO43765 313 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 FAM155BO75949 473 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 UNC5CO95185 931 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 SLC25A14O95258 325 aaPredicted RBP11.53□□□□□ -0.56
USP53-201ENST00000274030 ZNF10P21506 573 aaPredicted RBP11.53□□□□□ -0.56
USP53-201ENST00000274030 LPOP22079 712 aaPredicted RBP11.53□□□□□ -0.56
USP53-201ENST00000274030 GABRR2P28476 465 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 MTAPQ13126 283 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 PREPLQ4J6C6 727 aaPredicted RBP11.53□□□□□ -0.56
USP53-201ENST00000274030 UROC1Q96N76 676 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 NUAK2Q9H093 628 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 ERVK-5Q9HDB9 667 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 ATAD3AQ9NVI7 634 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 ADAM28Q9UKQ2 775 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 OR10H1Q9Y4A9 318 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 A0A087WXM4 84 aa11.52□□□□□ -0.56
USP53-201ENST00000274030 EFCAB10A6NFE3 127 aa11.52□□□□□ -0.56
USP53-201ENST00000274030 FARP2O94887 1054 aaPredicted RBP11.52□□□□□ -0.56
USP53-201ENST00000274030 NR2F1P10589 423 aa11.52□□□□□ -0.56
USP53-201ENST00000274030 ELNP15502 786 aa11.52□□□□□ -0.56
USP53-201ENST00000274030 PAX7P23759 505 aa11.52□□□□□ -0.56
USP53-201ENST00000274030 TLX1P31314 330 aaPredicted RBP11.52□□□□□ -0.56
USP53-201ENST00000274030 ST13P50502 369 aaKnown RBP11.52□□□□□ -0.56
USP53-201ENST00000274030 TAF13Q15543 124 aa11.52□□□□□ -0.56
USP53-201ENST00000274030 PDK4Q16654 411 aa11.52□□□□□ -0.56
USP53-201ENST00000274030 PTPN20Q4JDL3 420 aa11.52□□□□□ -0.56
USP53-201ENST00000274030 EIF3MQ7L2H7 374 aaKnown RBP11.52□□□□□ -0.56
USP53-201ENST00000274030 CAMK1DQ8IU85 385 aa11.52□□□□□ -0.56
USP53-201ENST00000274030 HOMEZQ8IX15 550 aa11.52□□□□□ -0.56
USP53-201ENST00000274030 FIBCD1Q8N539 461 aa11.52□□□□□ -0.56
USP53-201ENST00000274030 ATAD1Q8NBU5 361 aa11.52□□□□□ -0.56
USP53-201ENST00000274030 CLHC1Q8NHS4 586 aa11.52□□□□□ -0.56
USP53-201ENST00000274030 RNPEPL1Q9HAU8 725 aa11.52□□□□□ -0.56
USP53-201ENST00000274030 PCDH18Q9HCL0 1135 aa11.52□□□□□ -0.56
USP53-201ENST00000274030 ZNF232Q9UNY5 417 aa11.52□□□□□ -0.56
USP53-201ENST00000274030 ASF1AQ9Y294 204 aa11.52□□□□□ -0.56
USP53-201ENST00000274030 MTF2Q9Y483 593 aaPredicted RBP11.52□□□□□ -0.56
USP53-201ENST00000274030 MST1RQ04912 1400 aa11.52□□□□□ -0.57
USP53-201ENST00000274030 CNTNAP1P78357 1384 aa11.52□□□□□ -0.57
USP53-201ENST00000274030 OR10H2O60403 315 aa11.52□□□□□ -0.57
USP53-201ENST00000274030 CABYRO75952 493 aa11.52□□□□□ -0.57
USP53-201ENST00000274030 MLYCDO95822 493 aa11.52□□□□□ -0.57
USP53-201ENST00000274030 C21orf59P57076 290 aa11.52□□□□□ -0.57
USP53-201ENST00000274030 SQLEQ14534 574 aa11.52□□□□□ -0.57
USP53-201ENST00000274030 APLFQ8IW19 511 aaPredicted RBP11.52□□□□□ -0.57
USP53-201ENST00000274030 OR4L1Q8NH43 312 aa11.52□□□□□ -0.57
USP53-201ENST00000274030 STARD8Q92502 1023 aa11.52□□□□□ -0.57
USP53-201ENST00000274030 QRFPRQ96P65 431 aa11.52□□□□□ -0.57
USP53-201ENST00000274030 CPXM1Q96SM3 734 aa11.52□□□□□ -0.57
USP53-201ENST00000274030 MRPL57Q9BQC6 102 aaKnown RBP11.52□□□□□ -0.57
USP53-201ENST00000274030 BRD9Q9H8M2 597 aa11.52□□□□□ -0.57
USP53-201ENST00000274030 CIDEBQ9UHD4 219 aa11.52□□□□□ -0.57
USP53-201ENST00000274030 FAM237AA0A1B0GTK4 181 aa11.52□□□□□ -0.57
USP53-201ENST00000274030 GSAPA4D1B5 854 aa11.52□□□□□ -0.57
USP53-201ENST00000274030 C2orf71A6NGG8 1288 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms