RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 IRF9Q00978 393 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 PDE1CQ14123 709 aaPredicted RBP16.63■□□□□ 0.25
USP4-201ENST00000265560 CAMK1DQ8IU85 385 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 BBS5Q8N3I7 341 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 RYBPQ8N488 228 aaPredicted RBP16.63■□□□□ 0.25
USP4-201ENST00000265560 SORCS1Q8WY21 1168 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 TBATAQ96M53 351 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 PRKD2Q9BZL6 878 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 ZNF395Q9H8N7 513 aaPredicted RBP16.63■□□□□ 0.25
USP4-201ENST00000265560 BPIFA1Q9NP55 256 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 ARHGAP26Q9UNA1 814 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 ABL2P42684 1182 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 UBE3AQ05086 875 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 GRM3Q14832 879 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 LY6G5CQ5SRR4 150 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 PLD6Q8N2A8 252 aaKnown RBP16.63■□□□□ 0.25
USP4-201ENST00000265560 OR13J1Q8NGT2 312 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 SGSM3Q96HU1 749 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 DNAJC1Q96KC8 554 aaKnown RBP16.63■□□□□ 0.25
USP4-201ENST00000265560 NDNQ99608 321 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 EVLQ9UI08 416 aaPredicted RBP16.63■□□□□ 0.25
USP4-201ENST00000265560 MTF2Q9Y483 593 aaPredicted RBP16.63■□□□□ 0.25
USP4-201ENST00000265560 RAI2Q9Y5P3 530 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 LOC285095A0A1B0GVY8 99 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 A6NNZ2 444 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 XYLBO75191 536 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 HAUS5O94927 633 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 PRLP01236 227 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 CTPS1P17812 591 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 SLC1A2P43004 574 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 SLC18A2Q05940 514 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 TUBB8Q3ZCM7 444 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 ACCSLQ4AC99 568 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 COL13A1Q5TAT6 717 aaPredicted RBP16.63■□□□□ 0.25
USP4-201ENST00000265560 FYB2Q5VWT5 728 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 CCDC63Q8NA47 563 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 NAT14Q8WUY8 206 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 VPS39Q96JC1 886 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 PCDHB9Q9Y5E1 797 aa16.63■□□□□ 0.25
USP4-201ENST00000265560 ANKRD12Q6UB98 2062 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 F5P12259 2224 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 PIGNO95427 931 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 RB1P06400 928 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 ERVK-21P61565 698 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 OVGP1Q12889 678 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 TRAF2Q12933 501 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 THOC5Q13769 683 aaKnown RBP16.62■□□□□ 0.25
USP4-201ENST00000265560 MPPE1Q53F39 396 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 ARHGAP15Q53QZ3 475 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 CYS1Q717R9 158 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 RBBP8Q99708 897 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 CPNE1Q99829 537 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 TREX1Q9NSU2 369 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 MARCH4Q9P2E8 410 aaPredicted RBP16.62■□□□□ 0.25
USP4-201ENST00000265560 LDB2O43679 373 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 CR2P20023 1033 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 NEK3P51956 506 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 ZCCHC23Q6ZST2 131 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 EP400NLQ6ZTU2 488 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 MFSD6LQ8IWD5 586 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 TNS4Q8IZW8 715 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 TTC8Q8TAM2 541 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 RSPRY1Q96DX4 576 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 MOCOSQ96EN8 888 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 ZNF599Q96NL3 588 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 SNX15Q9NRS6 342 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.62■□□□□ 0.25
USP4-201ENST00000265560 SLCO3A1Q9UIG8 710 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 DNAH14Q0VDD8 3507 aa16.62■□□□□ 0.25
USP4-201ENST00000265560 LINC01565O15544 149 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 BGNP21810 368 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 TCEAL5Q5H9L2 206 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 PRSS36Q5K4E3 855 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 RARS2Q5T160 578 aaKnown RBP16.61■□□□□ 0.25
USP4-201ENST00000265560 TSTD2Q5T7W7 516 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 NEPROQ6NW34 567 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 CNSTQ6PJW8 725 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 SLC41A1Q8IVJ1 513 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 FATE1Q969F0 183 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 TADA1Q96BN2 335 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 SEC16BQ96JE7 1060 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 MAGEB18Q96M61 343 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 ARNT2Q9HBZ2 717 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 LHX3Q9UBR4 397 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 HEATR9A2RTY3 570 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 GPR39O43194 453 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 ALPIP09923 528 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 SERPINB9P50453 376 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 EPHA5P54756 1037 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 PLEKHG6Q3KR16 790 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 LRRC73Q5JTD7 316 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 PDPK2PQ6A1A2 396 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 CCDC117Q8IWD4 279 aaPredicted RBP16.61■□□□□ 0.25
USP4-201ENST00000265560 GPATCH11Q8N954 259 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 SLC28A3Q9HAS3 691 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 CRYL1Q9Y2S2 319 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 ZWINTO95229 277 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 CYBBP04839 570 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 TYRP14679 529 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 PRAMEP78395 509 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms