RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 LPOP22079 712 aaPredicted RBP10.83□□□□□ -0.68
CD44-201ENST00000263398 MAGEA10P43363 369 aaPredicted RBP10.83□□□□□ -0.68
CD44-201ENST00000263398 IDH2P48735 452 aaKnown RBP10.83□□□□□ -0.68
CD44-201ENST00000263398 CLK2P49760 499 aaKnown RBP10.83□□□□□ -0.68
CD44-201ENST00000263398 CRYBB1P53674 252 aaPredicted RBP10.83□□□□□ -0.68
CD44-201ENST00000263398 MRPS6P82932 125 aaKnown RBP10.83□□□□□ -0.68
CD44-201ENST00000263398 GBE1Q04446 702 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 TDRPQ86YL5 185 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 WDR36Q8NI36 951 aaKnown RBP10.83□□□□□ -0.68
CD44-201ENST00000263398 CENPIQ92674 756 aaPredicted RBP10.83□□□□□ -0.68
CD44-201ENST00000263398 FCRL2Q96LA5 508 aaPredicted RBP10.83□□□□□ -0.68
CD44-201ENST00000263398 B3GNT5Q9BYG0 378 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 MRPS26Q9BYN8 205 aaKnown RBP10.83□□□□□ -0.68
CD44-201ENST00000263398 POLR1BQ9H9Y6 1135 aa10.83□□□□□ -0.68
CD44-201ENST00000263398 FAM25AB3EWG3 89 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 FAM25CB3EWG5 89 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 FAM25GB3EWG6 89 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 TM7SF2O76062 418 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 BMP10O95393 424 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 OTCP00480 354 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 IDO1P14902 403 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 SLC7A2P52569 658 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 HSDL1Q3SXM5 330 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 RNASEH2BQ5TBB1 312 aaKnown RBP10.82□□□□□ -0.68
CD44-201ENST00000263398 TRIQKQ629K1 86 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 AMIGO2Q86SJ2 522 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 QRFPRQ96P65 431 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 SMAD5Q99717 465 aaKnown RBP10.82□□□□□ -0.68
CD44-201ENST00000263398 MRPL45Q9BRJ2 306 aaKnown RBP10.82□□□□□ -0.68
CD44-201ENST00000263398 GLOD4Q9HC38 313 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 SSU72Q9NP77 194 aaKnown RBP10.82□□□□□ -0.68
CD44-201ENST00000263398 SLC15A5A6NIM6 579 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 CLDN5O00501 218 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 MYL12BO14950 172 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 ASNA1O43681 348 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 NTRK1P04629 796 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 MAXP61244 160 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 FOLH1Q04609 750 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 APTXQ7Z2E3 356 aaKnown RBP10.82□□□□□ -0.68
CD44-201ENST00000263398 EPHX4Q8IUS5 362 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 RBM15BQ8NDT2 890 aaKnown RBP10.82□□□□□ -0.68
CD44-201ENST00000263398 OR7A2PQ8NGA2 310 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 BBS4Q96RK4 519 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 OSBPL7Q9BZF2 842 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 NUAK2Q9H093 628 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 ZNF180Q9UJW8 692 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 NOCTQ9UK39 431 aaKnown RBP10.82□□□□□ -0.68
CD44-201ENST00000263398 TRAF6Q9Y4K3 522 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 AK5Q9Y6K8 562 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 MRC1P22897 1456 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 CENPXA8MT69 81 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 KPNA5O15131 536 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 ALOX12P18054 663 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 IFNGR2P38484 337 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 PTGIRP43119 386 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 CDH13P55290 713 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 TRIM25Q14258 630 aaKnown RBP10.82□□□□□ -0.68
CD44-201ENST00000263398 ACOX1Q15067 660 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 PLCL1Q15111 1095 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 ZIK1Q3SY52 487 aaPredicted RBP10.82□□□□□ -0.68
CD44-201ENST00000263398 DGKKQ5KSL6 1271 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 GJC2Q5T442 439 aaPredicted RBP10.82□□□□□ -0.68
CD44-201ENST00000263398 ZNF549Q6P9A3 640 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 USP50Q70EL3 339 aaPredicted RBP10.82□□□□□ -0.68
CD44-201ENST00000263398 BTRCQ9Y297 605 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 GIT1Q9Y2X7 761 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 NR2E1Q9Y466 385 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 NRP2O60462 931 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 SH3BGRLO75368 114 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 SNRPD1P62314 119 aaKnown RBP10.82□□□□□ -0.68
CD44-201ENST00000263398 KCTD21Q4G0X4 260 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 CERCAMQ5T4B2 595 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 C9orf57Q5W0N0 161 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 ZNF544Q6NX49 715 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 DRICH1Q6PGQ1 229 aaPredicted RBP10.82□□□□□ -0.68
CD44-201ENST00000263398 GCNT7Q6ZNI0 430 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 SLC26A9Q7LBE3 791 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 ZNF438Q7Z4V0 828 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 MON1AQ86VX9 555 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 AMER2Q8N7J2 671 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 BPIFB6Q8NFQ5 453 aa10.82□□□□□ -0.68
CD44-201ENST00000263398 REXO4Q9GZR2 422 aaKnown RBP10.82□□□□□ -0.68
CD44-201ENST00000263398 XRN1Q8IZH2 1706 aaKnown RBP10.81□□□□□ -0.68
CD44-201ENST00000263398 A8MX80 341 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 MDM4O15151 490 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 PIRTP0C851 137 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 UQCRBP14927 111 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 ABL2P42684 1182 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 ENPEPQ07075 957 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 FASTKD3Q14CZ7 662 aaKnown RBP10.81□□□□□ -0.68
CD44-201ENST00000263398 SHROOM1Q2M3G4 852 aaPredicted RBP10.81□□□□□ -0.68
CD44-201ENST00000263398 SETMARQ53H47 684 aaPredicted RBP10.81□□□□□ -0.68
CD44-201ENST00000263398 ARHGAP36Q6ZRI8 547 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 ZNF572Q7Z3I7 529 aaPredicted RBP10.81□□□□□ -0.68
CD44-201ENST00000263398 DSG4Q86SJ6 1040 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 ADCY4Q8NFM4 1077 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 UBE2E3Q969T4 207 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 OSBPL10Q9BXB5 764 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 NIFKQ9BYG3 293 aaKnown RBP10.81□□□□□ -0.68
CD44-201ENST00000263398 OSBPL6Q9BZF3 934 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms