RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 OSBPL1AQ9BXW6 950 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 TTYH3Q9C0H2 523 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 SEPT11Q9NVA2 429 aaKnown RBP16.36■□□□□ 0.21
CLN3-246ENST00000636228 EVA1BQ9NVM1 165 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 APOBEC3BQ9UH17 382 aaKnown RBP16.36■□□□□ 0.21
CLN3-246ENST00000636228 SALL4Q9UJQ4 1053 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 SATB2Q9UPW6 733 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 SIK3Q9Y2K2 1263 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 MYLKQ15746 1914 aa16.36■□□□□ 0.21
CLN3-246ENST00000636228 CXorf51AA0A1B0GTR3 108 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 EME2A4GXA9 379 aaPredicted RBP16.35■□□□□ 0.21
CLN3-246ENST00000636228 TM7SF2O76062 418 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 PIGNO95427 931 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 EIF4A3P38919 411 aaKnown RBP16.35■□□□□ 0.21
CLN3-246ENST00000636228 RHOAP61586 193 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 C1QBPQ07021 282 aaKnown RBP16.35■□□□□ 0.21
CLN3-246ENST00000636228 SYCP1Q15431 976 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 CYTH1Q15438 398 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 NR0B2Q15466 257 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 KLHL40Q2TBA0 621 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 FKBP15Q5T1M5 1219 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 PCSK4Q6UW60 755 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 ZSCAN30Q86W11 494 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 SLC35F3Q8IY50 421 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 PHACTR4Q8IZ21 702 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 TP53I13Q8NBR0 393 aaPredicted RBP16.35■□□□□ 0.21
CLN3-246ENST00000636228 DENND6BQ8NEG7 585 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 NTAN1Q96AB6 310 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 EPAS1Q99814 870 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 LRRC61Q9BV99 259 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 CLPBQ9H078 707 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 RETREG1Q9H6L5 497 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 ASCL3Q9NQ33 180 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 SPASTQ9UBP0 616 aa16.35■□□□□ 0.21
CLN3-246ENST00000636228 SIGLEC16A6NMB1 481 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 RASA4BC9J798 803 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 YY2O15391 372 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 KLK10O43240 276 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 RASA4O43374 803 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 IGSF6O95976 241 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 TSHRP16473 764 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 RPL7AP62424 266 aaKnown RBP16.34■□□□□ 0.21
CLN3-246ENST00000636228 PTK2BQ14289 1009 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 CT47A1Q5JQC4 288 aaPredicted RBP16.34■□□□□ 0.21
CLN3-246ENST00000636228 ARHGAP40Q5TG30 622 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 TRIM72Q6ZMU5 477 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 LSMEM2Q8N112 164 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 RTL3Q8N8U3 475 aaKnown RBP16.34■□□□□ 0.21
CLN3-246ENST00000636228 BTN2A2Q8WVV5 523 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 ARHGEF26Q96DR7 871 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 VCPIP1Q96JH7 1222 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.34■□□□□ 0.21
CLN3-246ENST00000636228 BOCQ9BWV1 1114 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 SLC13A1Q9BZW2 595 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 SYNDIG1Q9H7V2 258 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 LHX3Q9UBR4 397 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 FZD10Q9ULW2 581 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 ENTPD2Q9Y5L3 495 aa16.34■□□□□ 0.21
CLN3-246ENST00000636228 TEX51A0A1B0GUA7 166 aa16.33■□□□□ 0.2
CLN3-246ENST00000636228 ZSCAN5CA6NGD5 496 aaPredicted RBP16.33■□□□□ 0.2
CLN3-246ENST00000636228 TK2O00142 265 aa16.33■□□□□ 0.2
CLN3-246ENST00000636228 TPP1O14773 563 aa16.33■□□□□ 0.2
CLN3-246ENST00000636228 DXOO77932 396 aaKnown RBP16.33■□□□□ 0.2
CLN3-246ENST00000636228 PRKCGP05129 697 aa16.33■□□□□ 0.2
CLN3-246ENST00000636228 TPM2P07951 284 aa16.33■□□□□ 0.2
CLN3-246ENST00000636228 ANXA6P08133 673 aa16.33■□□□□ 0.2
CLN3-246ENST00000636228 COPB1P53618 953 aaKnown RBP16.33■□□□□ 0.2
CLN3-246ENST00000636228 RAD51Q06609 339 aa16.33■□□□□ 0.2
CLN3-246ENST00000636228 SERINC3Q13530 473 aa16.33■□□□□ 0.2
CLN3-246ENST00000636228 IRF4Q15306 451 aa16.33■□□□□ 0.2
CLN3-246ENST00000636228 EFHC2Q5JST6 749 aa16.33■□□□□ 0.2
CLN3-246ENST00000636228 RD3Q7Z3Z2 195 aa16.33■□□□□ 0.2
CLN3-246ENST00000636228 PHF13Q86YI8 300 aaPredicted RBP16.33■□□□□ 0.2
CLN3-246ENST00000636228 C3orf20Q8ND61 904 aa16.33■□□□□ 0.2
CLN3-246ENST00000636228 NEK11Q8NG66 645 aa16.33■□□□□ 0.2
CLN3-246ENST00000636228 KCNE4Q8WWG9 221 aa16.33■□□□□ 0.2
CLN3-246ENST00000636228 TSACCQ96A04 125 aaPredicted RBP16.33■□□□□ 0.2
CLN3-246ENST00000636228 MCEEQ96PE7 176 aa16.33■□□□□ 0.2
CLN3-246ENST00000636228 LMBRD1Q9NUN5 540 aa16.33■□□□□ 0.2
CLN3-246ENST00000636228 GPATCH2LQ9NWQ4 482 aa16.33■□□□□ 0.2
CLN3-246ENST00000636228 SIRPGQ9P1W8 387 aa16.33■□□□□ 0.2
CLN3-246ENST00000636228 GULP1Q9UBP9 304 aa16.33■□□□□ 0.2
CLN3-246ENST00000636228 TDRD6O60522 2096 aaKnown RBP16.33■□□□□ 0.2
CLN3-246ENST00000636228 TCRBV5S1A1TA0A578 114 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 LMO7DNF2Z398 122 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 J3KR12 359 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 CALB1P05937 261 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 XPAP23025 273 aaPredicted RBP16.32■□□□□ 0.2
CLN3-246ENST00000636228 RBMS1P29558 406 aaKnown RBP16.32■□□□□ 0.2
CLN3-246ENST00000636228 ZNF143P52747 638 aaPredicted RBP16.32■□□□□ 0.2
CLN3-246ENST00000636228 GSCP56915 257 aaPredicted RBP16.32■□□□□ 0.2
CLN3-246ENST00000636228 ERVPABLB-1P60509 514 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 YPEL5P62699 121 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 PPARDQ03181 441 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 WSCD2Q2TBF2 565 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 TMEM52BQ4KMG9 183 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 INO80DQ53TQ3 878 aaPredicted RBP16.32■□□□□ 0.2
CLN3-246ENST00000636228 BROXQ5VW32 411 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 DNAJC24Q6P3W2 148 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 MACC1Q6ZN28 852 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms