RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 RIMKLBQ9ULI2 386 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 PCDHB12Q9Y5F1 795 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 DENND4CQ5VZ89 1909 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 CEP350Q5VT06 3117 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 FAM95CA0A1B0GW59 222 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 HNRNPCL1O60812 293 aaKnown RBP22.26■■□□□ 1.15
PNKP-220ENST00000627232 H2AFYO75367 372 aaKnown RBP22.26■■□□□ 1.15
PNKP-220ENST00000627232 IRF1P10914 325 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 NQO1P15559 274 aaKnown RBP22.26■■□□□ 1.15
PNKP-220ENST00000627232 KCNA4P22459 653 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 CRABP2P29373 138 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 SLC1A6P48664 564 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 IRF9Q00978 393 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 ZNF470Q6ECI4 717 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 ZCCHC23Q6ZST2 131 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 RAPH1Q70E73 1250 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 CLNKQ7Z7G1 428 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 PACS2Q86VP3 889 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 ARID3BQ8IVW6 561 aaPredicted RBP22.26■■□□□ 1.15
PNKP-220ENST00000627232 OR6Y1Q8NGX8 325 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 AUTS2Q8WXX7 1259 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 ZFRQ96KR1 1074 aaKnown RBP22.26■■□□□ 1.15
PNKP-220ENST00000627232 CINPQ9BW66 212 aaPredicted RBP22.26■■□□□ 1.15
PNKP-220ENST00000627232 C1QTNF1Q9BXJ1 281 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 WWP1Q9H0M0 922 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 ZBP1Q9H171 429 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 NMRAL1Q9HBL8 299 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 ARHGEF3Q9NR81 526 aa22.26■■□□□ 1.15
PNKP-220ENST00000627232 CAMSAP3Q9P1Y5 1249 aaPredicted RBP22.26■■□□□ 1.15
PNKP-220ENST00000627232 TTC24A2A3L6 582 aaPredicted RBP22.25■■□□□ 1.15
PNKP-220ENST00000627232 TEX28O15482 410 aa22.25■■□□□ 1.15
PNKP-220ENST00000627232 OLFM2O95897 454 aa22.25■■□□□ 1.15
PNKP-220ENST00000627232 RALBP11234 206 aa22.25■■□□□ 1.15
PNKP-220ENST00000627232 SGSHP51688 502 aa22.25■■□□□ 1.15
PNKP-220ENST00000627232 RAB10P61026 200 aa22.25■■□□□ 1.15
PNKP-220ENST00000627232 POU4F1Q01851 419 aa22.25■■□□□ 1.15
PNKP-220ENST00000627232 ACVR1Q04771 509 aa22.25■■□□□ 1.15
PNKP-220ENST00000627232 FAM91A1Q658Y4 838 aa22.25■■□□□ 1.15
PNKP-220ENST00000627232 OR13J1Q8NGT2 312 aa22.25■■□□□ 1.15
PNKP-220ENST00000627232 INPP5DQ92835 1189 aa22.25■■□□□ 1.15
PNKP-220ENST00000627232 WBP2Q969T9 261 aa22.25■■□□□ 1.15
PNKP-220ENST00000627232 SPON2Q9BUD6 331 aa22.25■■□□□ 1.15
PNKP-220ENST00000627232 C20orf27Q9GZN8 174 aa22.25■■□□□ 1.15
PNKP-220ENST00000627232 MFSD1Q9H3U5 465 aa22.25■■□□□ 1.15
PNKP-220ENST00000627232 IL21Q9HBE4 155 aa22.25■■□□□ 1.15
PNKP-220ENST00000627232 ZNF334Q9HCZ1 680 aaPredicted RBP22.25■■□□□ 1.15
PNKP-220ENST00000627232 G3V2L1 256 aa22.24■■□□□ 1.15
PNKP-220ENST00000627232 NDST3O95803 873 aa22.24■■□□□ 1.15
PNKP-220ENST00000627232 SLC35E2BP0CK96 405 aa22.24■■□□□ 1.15
PNKP-220ENST00000627232 CTSAP10619 480 aa22.24■■□□□ 1.15
PNKP-220ENST00000627232 LEPRP48357 1165 aaKnown RBP22.24■■□□□ 1.15
PNKP-220ENST00000627232 PRKAA2P54646 552 aa22.24■■□□□ 1.15
PNKP-220ENST00000627232 SLC41A1Q8IVJ1 513 aa22.24■■□□□ 1.15
PNKP-220ENST00000627232 TRIB3Q96RU7 358 aa22.24■■□□□ 1.15
PNKP-220ENST00000627232 FAM96AQ9H5X1 160 aa22.24■■□□□ 1.15
PNKP-220ENST00000627232 STN1Q9H668 368 aaKnown RBP22.24■■□□□ 1.15
PNKP-220ENST00000627232 ZNF395Q9H8N7 513 aaPredicted RBP22.24■■□□□ 1.15
PNKP-220ENST00000627232 IL23AQ9NPF7 189 aa22.24■■□□□ 1.15
PNKP-220ENST00000627232 ACOT9Q9Y305 439 aa22.24■■□□□ 1.15
PNKP-220ENST00000627232 A0A087X1B8 175 aa22.23■■□□□ 1.15
PNKP-220ENST00000627232 TMEM114B3SHH9 223 aa22.23■■□□□ 1.15
PNKP-220ENST00000627232 LDB2O43679 373 aa22.23■■□□□ 1.15
PNKP-220ENST00000627232 HAUS5O94927 633 aa22.23■■□□□ 1.15
PNKP-220ENST00000627232 ACRP10323 421 aa22.23■■□□□ 1.15
PNKP-220ENST00000627232 STMN1P16949 149 aa22.23■■□□□ 1.15
PNKP-220ENST00000627232 GMPRP36959 345 aa22.23■■□□□ 1.15
PNKP-220ENST00000627232 RASSF2P50749 326 aa22.23■■□□□ 1.15
PNKP-220ENST00000627232 CLCN5P51795 746 aa22.23■■□□□ 1.15
PNKP-220ENST00000627232 SMAD3P84022 425 aaKnown RBP22.23■■□□□ 1.15
PNKP-220ENST00000627232 ZBTB16Q05516 673 aa22.23■■□□□ 1.15
PNKP-220ENST00000627232 CXorf57Q6NSI4 855 aaKnown RBP22.23■■□□□ 1.15
PNKP-220ENST00000627232 CYB5D1Q6P9G0 228 aa22.23■■□□□ 1.15
PNKP-220ENST00000627232 NECAB2Q7Z6G3 386 aa22.23■■□□□ 1.15
PNKP-220ENST00000627232 TBC1D1Q86TI0 1168 aaPredicted RBP22.23■■□□□ 1.15
PNKP-220ENST00000627232 PIWIL2Q8TC59 973 aaKnown RBP22.23■■□□□ 1.15
PNKP-220ENST00000627232 PPP4R1Q8TF05 950 aa22.23■■□□□ 1.15
PNKP-220ENST00000627232 LRMDAQ9H2I8 198 aa22.23■■□□□ 1.15
PNKP-220ENST00000627232 KLC4Q9NSK0 619 aa22.23■■□□□ 1.15
PNKP-220ENST00000627232 ARIH1Q9Y4X5 557 aaPredicted RBP22.23■■□□□ 1.15
PNKP-220ENST00000627232 E2F8A0AVK6 867 aa22.22■■□□□ 1.15
PNKP-220ENST00000627232 ITM2AO43736 263 aa22.22■■□□□ 1.15
PNKP-220ENST00000627232 TSPAN3O60637 253 aa22.22■■□□□ 1.15
PNKP-220ENST00000627232 FGF18O76093 207 aa22.22■■□□□ 1.15
PNKP-220ENST00000627232 T-ENOLP0DO92 83 aa22.22■■□□□ 1.15
PNKP-220ENST00000627232 CR2P20023 1033 aa22.22■■□□□ 1.15
PNKP-220ENST00000627232 SERPINB3P29508 390 aa22.22■■□□□ 1.15
PNKP-220ENST00000627232 ABCE1P61221 599 aaKnown RBP22.22■■□□□ 1.15
PNKP-220ENST00000627232 ELF3P78545 371 aaPredicted RBP22.22■■□□□ 1.15
PNKP-220ENST00000627232 CTC1Q2NKJ3 1217 aa22.22■■□□□ 1.15
PNKP-220ENST00000627232 TSNAXIP1Q2TAA8 658 aa22.22■■□□□ 1.15
PNKP-220ENST00000627232 RNF219Q5W0B1 726 aaPredicted RBP22.22■■□□□ 1.15
PNKP-220ENST00000627232 ZYG11AQ6WRX3 759 aa22.22■■□□□ 1.15
PNKP-220ENST00000627232 WDR75Q8IWA0 830 aaKnown RBP22.22■■□□□ 1.15
PNKP-220ENST00000627232 HJURPQ8NCD3 748 aaPredicted RBP22.22■■□□□ 1.15
PNKP-220ENST00000627232 BRSK1Q8TDC3 778 aa22.22■■□□□ 1.15
PNKP-220ENST00000627232 GFRA2O00451 464 aa22.21■■□□□ 1.15
PNKP-220ENST00000627232 INSIG1O15503 277 aa22.21■■□□□ 1.15
PNKP-220ENST00000627232 PHGDHO43175 533 aaKnown RBP22.21■■□□□ 1.15
PNKP-220ENST00000627232 TRIM13O60858 407 aa22.21■■□□□ 1.15
PNKP-220ENST00000627232 KPNA2P52292 529 aaKnown RBP22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms