RNA–Protein interactions for RNA: ENST00000612558.4

CCDC47-207, Transcript of coiled-coil domain containing 47, humanhuman

TSL 5 BASIC

Gene CCDC47, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-207ENST00000612558 RNF43Q68DV7 783 aa9.02□□□□□ -0.97
CCDC47-207ENST00000612558 MFN1Q8IWA4 741 aa9.02□□□□□ -0.97
CCDC47-207ENST00000612558 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.02□□□□□ -0.97
CCDC47-207ENST00000612558 FIBINQ8TAL6 211 aa9.02□□□□□ -0.97
CCDC47-207ENST00000612558 SMG7Q92540 1137 aaKnown RBP9.02□□□□□ -0.97
CCDC47-207ENST00000612558 FOXJ1Q92949 421 aa9.02□□□□□ -0.97
CCDC47-207ENST00000612558 ZNF669Q96BR6 464 aaPredicted RBP9.02□□□□□ -0.97
CCDC47-207ENST00000612558 CENPTQ96BT3 561 aa9.02□□□□□ -0.97
CCDC47-207ENST00000612558 ITPKCQ96DU7 683 aa9.02□□□□□ -0.97
CCDC47-207ENST00000612558 FCRL3Q96P31 734 aaPredicted RBP9.02□□□□□ -0.97
CCDC47-207ENST00000612558 SMC6Q96SB8 1091 aa9.02□□□□□ -0.97
CCDC47-207ENST00000612558 CDCA3Q99618 268 aaPredicted RBP9.02□□□□□ -0.97
CCDC47-207ENST00000612558 GDF15Q99988 308 aa9.02□□□□□ -0.97
CCDC47-207ENST00000612558 MGME1Q9BQP7 344 aa9.02□□□□□ -0.97
CCDC47-207ENST00000612558 TRABDQ9H4I3 376 aa9.02□□□□□ -0.97
CCDC47-207ENST00000612558 ZFAND3Q9H8U3 227 aa9.02□□□□□ -0.97
CCDC47-207ENST00000612558 SLC28A3Q9HAS3 691 aa9.02□□□□□ -0.97
CCDC47-207ENST00000612558 KCNK9Q9NPC2 374 aa9.02□□□□□ -0.97
CCDC47-207ENST00000612558 PPANQ9NQ55 473 aaKnown RBP9.02□□□□□ -0.97
CCDC47-207ENST00000612558 CHRAC1Q9NRG0 131 aa9.02□□□□□ -0.97
CCDC47-207ENST00000612558 SMYD2Q9NRG4 433 aa9.02□□□□□ -0.97
CCDC47-207ENST00000612558 KIAA1522Q9P206 1035 aaPredicted RBP9.02□□□□□ -0.97
CCDC47-207ENST00000612558 TBC1D14Q9P2M4 693 aa9.02□□□□□ -0.97
CCDC47-207ENST00000612558 VPS28Q9UK41 221 aa9.02□□□□□ -0.97
CCDC47-207ENST00000612558 MRPS23Q9Y3D9 190 aaKnown RBP9.02□□□□□ -0.97
CCDC47-207ENST00000612558 OR51B4Q9Y5P0 310 aa9.02□□□□□ -0.97
CCDC47-207ENST00000612558 MIA3Q5JRA6 1907 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 CHD9Q3L8U1 2897 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 ZCWPW2A0A1B0GU75 182 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 LOC285095A0A1B0GVY8 99 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 TMEM120BA0PK00 339 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 FOXO6A8MYZ6 492 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 KRT37O76014 449 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 KRT38O76015 456 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 SERPINF2P08697 491 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 SNRPAP09012 282 aaKnown RBP9.01□□□□□ -0.97
CCDC47-207ENST00000612558 CHN1P15882 459 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 CREB1P16220 341 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 ADRA1DP25100 572 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 GBP2P32456 591 aaPredicted RBP9.01□□□□□ -0.97
CCDC47-207ENST00000612558 CSKP41240 450 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 NUMBP49757 651 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 SERPINB9P50453 376 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 SERPINH1P50454 418 aaKnown RBP9.01□□□□□ -0.97
CCDC47-207ENST00000612558 SLC18A1P54219 525 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 ARF5P84085 180 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 POU6F1Q14863 301 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 CYTH1Q15438 398 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 SLC1A5Q15758 541 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 SLC14A2Q15849 920 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 FYB2Q5VWT5 728 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 TTC19Q6DKK2 380 aaPredicted RBP9.01□□□□□ -0.97
CCDC47-207ENST00000612558 PKN3Q6P5Z2 889 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 CES3Q6UWW8 571 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 TPGS1Q6ZTW0 290 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 MARK2Q7KZI7 788 aaKnown RBP9.01□□□□□ -0.97
CCDC47-207ENST00000612558 KDELC2Q7Z4H8 507 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 DCAF4L2Q8NA75 395 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 PPHLN1Q8NEY8 458 aaKnown RBP9.01□□□□□ -0.97
CCDC47-207ENST00000612558 MDM1Q8TC05 714 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 MZB1Q8WU39 189 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 BHMTQ93088 406 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 ALKBH8Q96BT7 664 aaKnown RBP9.01□□□□□ -0.97
CCDC47-207ENST00000612558 MTBPQ96DY7 904 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 ALG14Q96F25 216 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 CERS2Q96G23 380 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 FEM1CQ96JP0 617 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 C2orf49Q9BVC5 232 aaPredicted RBP9.01□□□□□ -0.97
CCDC47-207ENST00000612558 SFXN1Q9H9B4 322 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 MRM3Q9HC36 420 aaKnown RBP9.01□□□□□ -0.97
CCDC47-207ENST00000612558 SSU72Q9NP77 194 aaKnown RBP9.01□□□□□ -0.97
CCDC47-207ENST00000612558 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.01□□□□□ -0.97
CCDC47-207ENST00000612558 ACTL7AQ9Y615 435 aa9.01□□□□□ -0.97
CCDC47-207ENST00000612558 MYOFQ9NZM1 2061 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 CXorf51AA0A1B0GTR3 108 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 A0A1W2PPM1 405 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 SRRM3A6NNA2 597 aaPredicted RBP9□□□□□ -0.97
CCDC47-207ENST00000612558 INSIG1O15503 277 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 PRPF4O43172 522 aaKnown RBP eCLIP9□□□□□ -0.97
CCDC47-207ENST00000612558 SNAP91O60641 907 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 FAM155BO75949 473 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 PRAMEF12O95522 483 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 CD160O95971 181 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 MT-ND3P03897 115 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 KRT4P19013 534 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 CR2P20023 1033 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 CNTFP26441 200 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 WEE1P30291 646 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 LSP1P33241 339 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 CHRNA4P43681 627 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 SCNN1BP51168 640 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 PLK1P53350 603 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 CDK18Q07002 472 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 NSUN2Q08J23 767 aaKnown RBP eCLIP9□□□□□ -0.97
CCDC47-207ENST00000612558 SLC12A1Q13621 1099 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 KCNC3Q14003 757 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 IHHQ14623 411 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 ZNF77Q15935 545 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 RETSATQ6NUM9 610 aa9□□□□□ -0.97
CCDC47-207ENST00000612558 ARID3BQ8IVW6 561 aaPredicted RBP9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms