RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 DPY19L2P1Q6NXN4 242 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 CLEC18BQ6UXF7 455 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 LRRC31Q6UY01 552 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 RBM44Q6ZP01 1051 aaKnown RBP8.78□□□□□ -1
SHKBP1-220ENST00000599716 ENOSF1Q7L5Y1 443 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 SETD3Q86TU7 594 aaPredicted RBP8.78□□□□□ -1
SHKBP1-220ENST00000599716 XYLT1Q86Y38 959 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 PHACTR4Q8IZ21 702 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 EXD3Q8N9H8 876 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 KYQ8NBH2 561 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 CLEC18CQ8NCF0 446 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 ZNF397Q8NF99 534 aaPredicted RBP8.78□□□□□ -1
SHKBP1-220ENST00000599716 SNRNP27Q8WVK2 155 aaKnown RBP8.78□□□□□ -1
SHKBP1-220ENST00000599716 CPA5Q8WXQ8 436 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 TSACCQ96A04 125 aaPredicted RBP8.78□□□□□ -1
SHKBP1-220ENST00000599716 FUBP1Q96AE4 644 aaKnown RBP8.78□□□□□ -1
SHKBP1-220ENST00000599716 PPP1R16AQ96I34 528 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 FEM1CQ96JP0 617 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 KLHL32Q96NJ5 620 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 IL12RB2Q99665 862 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 CCDC3Q9BQI4 270 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 WRAP53Q9BUR4 548 aaKnown RBP8.78□□□□□ -1
SHKBP1-220ENST00000599716 DUSP23Q9BVJ7 150 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 C1QTNF2Q9BXJ5 285 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 PDCL3Q9H2J4 239 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 EPB41L5Q9HCM4 733 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 HOOK1Q9UJC3 728 aaKnown RBP8.78□□□□□ -1
SHKBP1-220ENST00000599716 MAN2B2Q9Y2E5 1009 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 HS3ST3A1Q9Y663 406 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 CHD5Q8TDI0 1954 aa8.77□□□□□ -1
SHKBP1-220ENST00000599716 UNC13CQ8NB66 2214 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 ANKHD1Q8IWZ3 2542 aaKnown RBP8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 IGLV3-10A0A075B6K4 115 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 ILVBLA1L0T0 632 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 CDRT15L2A8MXV6 281 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 H3BM21 787 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 K7ENP7 123 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 INSIG1O15503 277 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 PRKCGP05129 697 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 MTIF2P46199 727 aaKnown RBP8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 SKOR1P84550 965 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 SLC25A52Q3SY17 297 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 FAXCQ5TGI0 409 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 NAA35Q5VZE5 725 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 RWDD4Q6NW29 188 aaKnown RBP8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 INO80CQ6PI98 192 aaPredicted RBP8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 CCDC81Q6ZN84 652 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 RD3Q7Z3Z2 195 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 NOP9Q86U38 636 aaKnown RBP8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 VASH2Q86V25 355 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 JAMLQ86YT9 394 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 LSMEM2Q8N112 164 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 SDR16C5Q8N3Y7 309 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 PCDH20Q8N6Y1 951 aaKnown RBP8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 PCDH19Q8TAB3 1148 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 SLC20A1Q8WUM9 679 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 EXTL1Q92935 676 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 NT5C3BQ969T7 300 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 CENPTQ96BT3 561 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 IFT43Q96FT9 208 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 EXOC2Q96KP1 924 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 BOCQ9BWV1 1114 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 ZYG11BQ9C0D3 744 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 KLC2Q9H0B6 622 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 METTL5Q9NRN9 209 aaKnown RBP8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 STAP1Q9ULZ2 295 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 FHOD1Q9Y613 1164 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 ANKRD36A6QL64 1941 aa8.77□□□□□ -1.01
SHKBP1-220ENST00000599716 LRP4O75096 1905 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 PIGNO95427 931 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 ANXA6P08133 673 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 MMEP08473 750 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 CYP11B1P15538 503 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 WT1P19544 449 aaPredicted RBP8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 ITIH1P19827 911 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 ELAVL4P26378 380 aaKnown RBP8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 EIF4A3P38919 411 aaKnown RBP8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 PPP1R2P41236 205 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 THOP1P52888 689 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 CYP4F2P78329 520 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 CCL7P80098 99 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 CCDC15Q0P6D6 951 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 SPIDRQ14159 915 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 IRF4Q15306 451 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 KLHL40Q2TBA0 621 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 LINC00303Q3SY05 128 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 ZNF805Q5CZA5 627 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 RETSATQ6NUM9 610 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 TTC7BQ86TV6 843 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 ZNF354CQ86Y25 554 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 DCP2Q8IU60 420 aaKnown RBP8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 HID1Q8IV36 788 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 FAM71AQ8IYT1 594 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 PYROXD2Q8N2H3 581 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 CCDC185Q8N715 623 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 Q8N9G6 341 aaPredicted RBP8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 TMEM35BQ8NCS4 154 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 JOSD2Q8TAC2 188 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 GPT2Q8TD30 523 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 CCDC74AQ96AQ1 378 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms