RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 PTAR1Q7Z6K3 402 aaPredicted RBP20.74■□□□□ 0.91
SHMT1-209ENST00000582653 TTC7BQ86TV6 843 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 UMODL1-AS1Q8N2C9 162 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 CASKIN2Q8WXE0 1202 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 ARHGEF26Q96DR7 871 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 CELF6Q96J87 481 aaKnown RBP20.74■□□□□ 0.91
SHMT1-209ENST00000582653 EXOC2Q96KP1 924 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 APOLD1Q96LR9 279 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 GDAP1L1Q96MZ0 367 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 PEBP4Q96S96 227 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 TRPM6Q9BX84 2022 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 DHX35Q9H5Z1 703 aaKnown RBP20.74■□□□□ 0.91
SHMT1-209ENST00000582653 AP4E1Q9UPM8 1137 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 J3KR12 359 aa20.73■□□□□ 0.91
SHMT1-209ENST00000582653 MT-CO3P00414 261 aa20.73■□□□□ 0.91
SHMT1-209ENST00000582653 SERPINC1P01008 464 aa20.73■□□□□ 0.91
SHMT1-209ENST00000582653 DESP17661 470 aa20.73■□□□□ 0.91
SHMT1-209ENST00000582653 RAD51Q06609 339 aa20.73■□□□□ 0.91
SHMT1-209ENST00000582653 KLHL30Q0D2K2 578 aa20.73■□□□□ 0.91
SHMT1-209ENST00000582653 PARP15Q460N3 678 aa20.73■□□□□ 0.91
SHMT1-209ENST00000582653 PPP1R2P3Q6NXS1 205 aa20.73■□□□□ 0.91
SHMT1-209ENST00000582653 USP29Q9HBJ7 922 aa20.73■□□□□ 0.91
SHMT1-209ENST00000582653 CNOT8Q9UFF9 292 aaKnown RBP20.73■□□□□ 0.91
SHMT1-209ENST00000582653 IPO11Q9UI26 975 aaKnown RBP20.73■□□□□ 0.91
SHMT1-209ENST00000582653 MFHAS1Q9Y4C4 1052 aa20.73■□□□□ 0.91
SHMT1-209ENST00000582653 CSNK1G3Q9Y6M4 447 aa20.73■□□□□ 0.91
SHMT1-209ENST00000582653 K7ESM1 405 aa20.72■□□□□ 0.91
SHMT1-209ENST00000582653 AREL1O15033 823 aa20.72■□□□□ 0.91
SHMT1-209ENST00000582653 FGF10O15520 208 aaPredicted RBP20.72■□□□□ 0.91
SHMT1-209ENST00000582653 TLX3O43711 291 aaPredicted RBP20.72■□□□□ 0.91
SHMT1-209ENST00000582653 IGSF6O95976 241 aa20.72■□□□□ 0.91
SHMT1-209ENST00000582653 GP1BAP07359 652 aa20.72■□□□□ 0.91
SHMT1-209ENST00000582653 NME1P15531 152 aaKnown RBP20.72■□□□□ 0.91
SHMT1-209ENST00000582653 PRKCIP41743 596 aa20.72■□□□□ 0.91
SHMT1-209ENST00000582653 DUSP3P51452 185 aaPredicted RBP20.72■□□□□ 0.91
SHMT1-209ENST00000582653 PFN3P60673 137 aa20.72■□□□□ 0.91
SHMT1-209ENST00000582653 ERMARDQ5T6L9 678 aa20.72■□□□□ 0.91
SHMT1-209ENST00000582653 DENND6BQ8NEG7 585 aa20.72■□□□□ 0.91
SHMT1-209ENST00000582653 CENPTQ96BT3 561 aa20.72■□□□□ 0.91
SHMT1-209ENST00000582653 DCBLD2Q96PD2 775 aa20.72■□□□□ 0.91
SHMT1-209ENST00000582653 SNRNP25Q9BV90 132 aaKnown RBP20.72■□□□□ 0.91
SHMT1-209ENST00000582653 SLC39A8Q9C0K1 460 aa20.72■□□□□ 0.91
SHMT1-209ENST00000582653 LRRC19Q9H756 370 aa20.72■□□□□ 0.91
SHMT1-209ENST00000582653 MYO1AQ9UBC5 1043 aa20.72■□□□□ 0.91
SHMT1-209ENST00000582653 LHX3Q9UBR4 397 aa20.72■□□□□ 0.91
SHMT1-209ENST00000582653 SYCE3A1L190 88 aa20.71■□□□□ 0.91
SHMT1-209ENST00000582653 H3BM21 787 aa20.71■□□□□ 0.91
SHMT1-209ENST00000582653 EEF2KO00418 725 aaKnown RBP20.71■□□□□ 0.91
SHMT1-209ENST00000582653 OPA1O60313 960 aa20.71■□□□□ 0.91
SHMT1-209ENST00000582653 MMP20O60882 483 aa20.71■□□□□ 0.91
SHMT1-209ENST00000582653 GZMAP12544 262 aa20.71■□□□□ 0.91
SHMT1-209ENST00000582653 MYF5P13349 255 aa20.71■□□□□ 0.91
SHMT1-209ENST00000582653 TIMP2P16035 220 aa20.71■□□□□ 0.91
SHMT1-209ENST00000582653 MIPP30301 263 aa20.71■□□□□ 0.91
SHMT1-209ENST00000582653 PDE1CQ14123 709 aaPredicted RBP20.71■□□□□ 0.91
SHMT1-209ENST00000582653 TPRG1LQ5T0D9 272 aa20.71■□□□□ 0.91
SHMT1-209ENST00000582653 CDCP2Q5VXM1 449 aa20.71■□□□□ 0.91
SHMT1-209ENST00000582653 LRRC69Q6ZNQ3 347 aa20.71■□□□□ 0.91
SHMT1-209ENST00000582653 CYP4V2Q6ZWL3 525 aaPredicted RBP20.71■□□□□ 0.91
SHMT1-209ENST00000582653 PARGQ86W56 976 aa20.71■□□□□ 0.91
SHMT1-209ENST00000582653 FGF11Q92914 225 aa20.71■□□□□ 0.91
SHMT1-209ENST00000582653 ZNF653Q96CK0 615 aa20.71■□□□□ 0.91
SHMT1-209ENST00000582653 KCTD15Q96SI1 283 aaPredicted RBP20.71■□□□□ 0.91
SHMT1-209ENST00000582653 PDFQ9HBH1 243 aa20.71■□□□□ 0.91
SHMT1-209ENST00000582653 CBX8Q9HC52 389 aa20.71■□□□□ 0.91
SHMT1-209ENST00000582653 EVA1BQ9NVM1 165 aa20.71■□□□□ 0.91
SHMT1-209ENST00000582653 UBA2Q9UBT2 640 aaPredicted RBP20.71■□□□□ 0.91
SHMT1-209ENST00000582653 KLF15Q9UIH9 416 aa20.71■□□□□ 0.91
SHMT1-209ENST00000582653 MYLKQ15746 1914 aa20.7■□□□□ 0.91
SHMT1-209ENST00000582653 LY6G6EA0A0G2JKS1 128 aa20.7■□□□□ 0.9
SHMT1-209ENST00000582653 RRP8O43159 456 aaKnown RBP20.7■□□□□ 0.9
SHMT1-209ENST00000582653 NEBLO76041 1014 aa20.7■□□□□ 0.9
SHMT1-209ENST00000582653 RNF8O76064 485 aa20.7■□□□□ 0.9
SHMT1-209ENST00000582653 PIGNO95427 931 aa20.7■□□□□ 0.9
SHMT1-209ENST00000582653 ABCG1P45844 678 aa20.7■□□□□ 0.9
SHMT1-209ENST00000582653 PAPOLAP51003 745 aaKnown RBP20.7■□□□□ 0.9
SHMT1-209ENST00000582653 NDST2P52849 883 aa20.7■□□□□ 0.9
SHMT1-209ENST00000582653 LUZP1Q86V48 1076 aa20.7■□□□□ 0.9
SHMT1-209ENST00000582653 HCAR2Q8TDS4 363 aa20.7■□□□□ 0.9
SHMT1-209ENST00000582653 WRAP53Q9BUR4 548 aaKnown RBP20.7■□□□□ 0.9
SHMT1-209ENST00000582653 CPEB1Q9BZB8 566 aaKnown RBP20.7■□□□□ 0.9
SHMT1-209ENST00000582653 DKK3Q9UBP4 350 aa20.7■□□□□ 0.9
SHMT1-209ENST00000582653 SALL4Q9UJQ4 1053 aa20.7■□□□□ 0.9
SHMT1-209ENST00000582653 U3KQA8 63 aa20.7■□□□□ 0.9
SHMT1-209ENST00000582653 TDRD6O60522 2096 aaKnown RBP20.69■□□□□ 0.9
SHMT1-209ENST00000582653 LOC400499M0QZD8 3231 aa20.69■□□□□ 0.9
SHMT1-209ENST00000582653 RIOK3O14730 519 aaKnown RBP20.69■□□□□ 0.9
SHMT1-209ENST00000582653 TPP1O14773 563 aa20.69■□□□□ 0.9
SHMT1-209ENST00000582653 DAPK3O43293 454 aa20.69■□□□□ 0.9
SHMT1-209ENST00000582653 PRPSAP2O60256 369 aa20.69■□□□□ 0.9
SHMT1-209ENST00000582653 PRAMEF11O60813 436 aa20.69■□□□□ 0.9
SHMT1-209ENST00000582653 TM7SF2O76062 418 aa20.69■□□□□ 0.9
SHMT1-209ENST00000582653 ITPKBP27987 946 aa20.69■□□□□ 0.9
SHMT1-209ENST00000582653 HTR7P34969 479 aa20.69■□□□□ 0.9
SHMT1-209ENST00000582653 ACTN2P35609 894 aa20.69■□□□□ 0.9
SHMT1-209ENST00000582653 YPEL5P62699 121 aa20.69■□□□□ 0.9
SHMT1-209ENST00000582653 PTK2BQ14289 1009 aa20.69■□□□□ 0.9
SHMT1-209ENST00000582653 PPP6R3Q5H9R7 873 aaPredicted RBP20.69■□□□□ 0.9
SHMT1-209ENST00000582653 ZCCHC8Q6NZY4 707 aaKnown RBP20.69■□□□□ 0.9
SHMT1-209ENST00000582653 RFX8Q6ZV50 586 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms