RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 KLF1Q13351 362 aaPredicted RBP9.32□□□□□ -0.92
VPS35-206ENST00000565228 GSE1Q14687 1217 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 PRKD1Q15139 912 aaPredicted RBP9.32□□□□□ -0.92
VPS35-206ENST00000565228 SIX1Q15475 284 aaPredicted RBP9.32□□□□□ -0.92
VPS35-206ENST00000565228 ZNF284Q2VY69 593 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 TMEM259Q4ZIN3 620 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 ZNF805Q5CZA5 627 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 TFDP3Q5H9I0 405 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 ZFYVE27Q5T4F4 411 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 MEI1Q5TIA1 1274 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 SLC36A4Q6YBV0 504 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 PRR23CQ6ZRP0 262 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 MICALCLQ6ZW33 695 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 BBS12Q6ZW61 710 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 CYP2U1Q7Z449 544 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 RCOR2Q8IZ40 523 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 PELI3Q8N2H9 469 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 ATPAF2Q8N5M1 289 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.32□□□□□ -0.92
VPS35-206ENST00000565228 CCDC112Q8NEF3 446 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 CADM4Q8NFZ8 388 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 OR2T34Q8NGX1 318 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 GANCQ8TET4 914 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 CASKIN2Q8WXE0 1202 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 TADA1Q96BN2 335 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 GDAP1L1Q96MZ0 367 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 DCBLD2Q96PD2 775 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 TLR10Q9BXR5 811 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 CPEB1Q9BZB8 566 aaKnown RBP9.32□□□□□ -0.92
VPS35-206ENST00000565228 IL21RQ9HBE5 538 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 SGK2Q9HBY8 427 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 NT5MQ9NPB1 228 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 FZD3Q9NPG1 666 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 NCDNQ9UBB6 729 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 PNMA8BQ9ULN7 279 aaPredicted RBP9.32□□□□□ -0.92
VPS35-206ENST00000565228 SCML1Q9UN30 329 aa9.32□□□□□ -0.92
VPS35-206ENST00000565228 PCNX2A6NKB5 2137 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 A0A1W2PPC4 97 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 A0A1W2PQU0 124 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 C1QTNF3-AMACRE9PGA6 284 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 KCNK3O14649 394 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 HTRA2O43464 458 aaPredicted RBP9.31□□□□□ -0.92
VPS35-206ENST00000565228 RNASEH1O60930 286 aaKnown RBP9.31□□□□□ -0.92
VPS35-206ENST00000565228 RNGTTO60942 597 aaKnown RBP9.31□□□□□ -0.92
VPS35-206ENST00000565228 NDUFS2O75306 463 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 IGSF6O95976 241 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 JCHAINP01591 159 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 PRNPP04156 253 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 PRLRP16471 622 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 PTPN3P26045 913 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 PTPN7P35236 360 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 SERPINB6P35237 376 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 MMP13P45452 471 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 CSNK1EP49674 416 aaKnown RBP9.31□□□□□ -0.92
VPS35-206ENST00000565228 GEMIN4P57678 1058 aaKnown RBP9.31□□□□□ -0.92
VPS35-206ENST00000565228 IFI35P80217 286 aaPredicted RBP9.31□□□□□ -0.92
VPS35-206ENST00000565228 SKOR1P84550 965 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 NSUN2Q08J23 767 aaKnown RBP eCLIP9.31□□□□□ -0.92
VPS35-206ENST00000565228 E2F5Q15329 346 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 ELF2Q15723 593 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 CSRP2Q16527 193 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 PPP2R5EQ16537 467 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 IFI16Q16666 785 aaKnown RBP9.31□□□□□ -0.92
VPS35-206ENST00000565228 TTC31Q49AM3 519 aaPredicted RBP9.31□□□□□ -0.92
VPS35-206ENST00000565228 SPDYCQ5MJ68 293 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 PRAMEF14Q5SWL7 426 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 KCTD16Q68DU8 428 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 ALG1LQ6GMV1 187 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 RFLNAQ6ZTI6 216 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 PRPF39Q86UA1 669 aaKnown RBP9.31□□□□□ -0.92
VPS35-206ENST00000565228 SPATS2Q86XZ4 545 aaKnown RBP9.31□□□□□ -0.92
VPS35-206ENST00000565228 SYT12Q8IV01 421 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 MAP7D3Q8IWC1 876 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 CCDC13Q8IYE1 715 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 C17orf53Q8N3J3 647 aaPredicted RBP9.31□□□□□ -0.92
VPS35-206ENST00000565228 RNF10Q8N5U6 811 aaKnown RBP9.31□□□□□ -0.92
VPS35-206ENST00000565228 FATE1Q969F0 183 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 ZNF599Q96NL3 588 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 NUDCD1Q96RS6 583 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 KLF6Q99612 283 aaPredicted RBP9.31□□□□□ -0.92
VPS35-206ENST00000565228 CINPQ9BW66 212 aaPredicted RBP9.31□□□□□ -0.92
VPS35-206ENST00000565228 OSBPL8Q9BZF1 889 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 SUV39H2Q9H5I1 410 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 TM9SF3Q9HD45 589 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 RBM22Q9NW64 420 aaKnown RBP eCLIP9.31□□□□□ -0.92
VPS35-206ENST00000565228 SEPT3Q9UH03 358 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 GMEB2Q9UKD1 530 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 AMFRQ9UKV5 643 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 COQ6Q9Y2Z9 468 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 PCDHGA5Q9Y5G8 931 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 CNOT1A5YKK6 2376 aaKnown RBP9.31□□□□□ -0.92
VPS35-206ENST00000565228 MYLKQ15746 1914 aa9.31□□□□□ -0.92
VPS35-206ENST00000565228 PKD1L2Q7Z442 2459 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 SPTBN2O15020 2390 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 TPRP12270 2363 aaKnown RBP9.3□□□□□ -0.92
VPS35-206ENST00000565228 SCN8AQ9UQD0 1980 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 TBC1D3DA0A087WVF3 549 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 TBC1D3IA0A087WXS9 549 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 TBC1D3EA0A087X179 549 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 TBC1D3KA0A087X1G2 549 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms