RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 IGSF8Q969P0 613 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 TRIM43Q96BQ3 446 aaPredicted RBP7.59□□□□□ -1.19
VPS39-204ENST00000561818 FAR2Q96K12 515 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 FAM111AQ96PZ2 611 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 SEMA3CQ99985 751 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 ELAC2Q9BQ52 826 aaKnown RBP7.59□□□□□ -1.19
VPS39-204ENST00000561818 TCF25Q9BQ70 676 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 TRMOQ9BU70 441 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 VN1R3Q9BXE9 311 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 CDH19Q9H159 772 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 CCDC68Q9H2F9 335 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 CRISPLD1Q9H336 500 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 NOL6Q9H6R4 1146 aaKnown RBP7.59□□□□□ -1.19
VPS39-204ENST00000561818 SYTL2Q9HCH5 934 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 SNX15Q9NRS6 342 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 PCMTD2Q9NV79 361 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 TRIM33Q9UPN9 1127 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 APOBEC2Q9Y235 224 aaKnown RBP7.59□□□□□ -1.19
VPS39-204ENST00000561818 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.59□□□□□ -1.19
VPS39-204ENST00000561818 ACOT9Q9Y305 439 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 ZFP37Q9Y6Q3 630 aaPredicted RBP7.59□□□□□ -1.19
VPS39-204ENST00000561818 SCN5AQ14524 2016 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 A0A096LPK6 155 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 A0A1W2PPM1 405 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 H7C0S8 307 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 TPP1O14773 563 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 SLC22A2O15244 555 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 TGM5O43548 720 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 PLIN3O60664 434 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 DNAJC6O75061 913 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 SPAG7O75391 227 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 RPP40O75818 363 aaKnown RBP7.58□□□□□ -1.2
VPS39-204ENST00000561818 DNAJC8O75937 253 aaPredicted RBP7.58□□□□□ -1.2
VPS39-204ENST00000561818 SEC24AO95486 1093 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 GLP2RO95838 553 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 TBX18O95935 607 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 IGSF6O95976 241 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 MYCP01106 439 aaPredicted RBP7.58□□□□□ -1.2
VPS39-204ENST00000561818 HMBSP08397 361 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 CNPP09543 421 aaKnown RBP7.58□□□□□ -1.2
VPS39-204ENST00000561818 EZRP15311 586 aaKnown RBP7.58□□□□□ -1.2
VPS39-204ENST00000561818 PCSK2P16519 638 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 HOXD9P28356 352 aaPredicted RBP7.58□□□□□ -1.2
VPS39-204ENST00000561818 GABRR2P28476 465 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 PMLP29590 882 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 ADSLP30566 484 aaPredicted RBP7.58□□□□□ -1.2
VPS39-204ENST00000561818 NNMTP40261 264 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 CD86P42081 329 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 NRLP54845 237 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 C1QTNF8P60827 252 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 SLC10A7Q0GE19 358 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 STX3Q13277 289 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 SEPT6Q14141 434 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 USP10Q14694 798 aaKnown RBP7.58□□□□□ -1.2
VPS39-204ENST00000561818 POU6F1Q14863 301 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 HSP90AA5PQ58FG0 334 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 METTL21CQ5VZV1 264 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 NADSYN1Q6IA69 706 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 FSTL4Q6MZW2 842 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 LRRC8EQ6NSJ5 796 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 TRMT10BQ6PF06 316 aaKnown RBP7.58□□□□□ -1.2
VPS39-204ENST00000561818 PIWIL4Q7Z3Z4 852 aaKnown RBP7.58□□□□□ -1.2
VPS39-204ENST00000561818 PRPF39Q86UA1 669 aaKnown RBP7.58□□□□□ -1.2
VPS39-204ENST00000561818 SUGP1Q8IWZ8 645 aaKnown RBP7.58□□□□□ -1.2
VPS39-204ENST00000561818 AGGF1Q8N302 714 aaeCLIP7.58□□□□□ -1.2
VPS39-204ENST00000561818 FIBINQ8TAL6 211 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 WFIKKN2Q8TEU8 576 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 DIS3LQ8TF46 1054 aaKnown RBP7.58□□□□□ -1.2
VPS39-204ENST00000561818 CCT6BQ92526 530 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 INPP5DQ92835 1189 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 MRRFQ96E11 262 aaKnown RBP7.58□□□□□ -1.2
VPS39-204ENST00000561818 SERAC1Q96JX3 654 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 B3GALT6Q96L58 329 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 KLHL5Q96PQ7 755 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 MRPL57Q9BQC6 102 aaKnown RBP7.58□□□□□ -1.2
VPS39-204ENST00000561818 GORASP1Q9BQQ3 440 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 CEP41Q9BYV8 373 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 SLC13A1Q9BZW2 595 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 MRPL46Q9H2W6 279 aaKnown RBP7.58□□□□□ -1.2
VPS39-204ENST00000561818 TASP1Q9H6P5 420 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 ATP13A3Q9H7F0 1226 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 EML4Q9HC35 981 aaKnown RBP7.58□□□□□ -1.2
VPS39-204ENST00000561818 DZANK1Q9NVP4 752 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 NCKIPSDQ9NZQ3 722 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 COPG2Q9UBF2 871 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 VTI1BQ9UEU0 232 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 SLC25A13Q9UJS0 675 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 VPS28Q9UK41 221 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 APPL1Q9UKG1 709 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 NUDT5Q9UKK9 219 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 FBXO5Q9UKT4 447 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 STK38LQ9Y2H1 464 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 PKP3Q9Y446 797 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 PCDHB1Q9Y5F3 818 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 CPQQ9Y646 472 aa7.58□□□□□ -1.2
VPS39-204ENST00000561818 MYO18AQ92614 2054 aaKnown RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 SYCE1LA8MT33 242 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 CXorf49A8MYA2 514 aaPredicted RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 H3BNC9 293 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 GFRA2O00451 464 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms