RNA–Protein interactions for RNA: ENST00000557713.5

SCFD1-224, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 556 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-224ENST00000557713 TTYH3Q9C0H2 523 aa16.16■□□□□ 0.18
SCFD1-224ENST00000557713 CPNE5Q9HCH3 593 aa16.16■□□□□ 0.18
SCFD1-224ENST00000557713 MBNL1Q9NR56 388 aaKnown RBP16.16■□□□□ 0.18
SCFD1-224ENST00000557713 THSD1Q9NS62 852 aa16.16■□□□□ 0.18
SCFD1-224ENST00000557713 TAB2Q9NYJ8 693 aa16.16■□□□□ 0.18
SCFD1-224ENST00000557713 APOBEC3BQ9UH17 382 aaKnown RBP16.16■□□□□ 0.18
SCFD1-224ENST00000557713 SATB2Q9UPW6 733 aa16.16■□□□□ 0.18
SCFD1-224ENST00000557713 MFHAS1Q9Y4C4 1052 aa16.16■□□□□ 0.18
SCFD1-224ENST00000557713 CFAP46Q8IYW2 2715 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 MGAQ8IWI9 3026 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 ZSCAN5CA6NGD5 496 aaPredicted RBP16.15■□□□□ 0.18
SCFD1-224ENST00000557713 LMO7DNF2Z398 122 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 ERVH48-1M5A8F1 160 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 TOR1BO14657 336 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 YY2O15391 372 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 BUB1O43683 1085 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 TCEA3O75764 348 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 TM7SF2O76062 418 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 TMCC1O94876 653 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 ZIC2O95409 532 aaPredicted RBP16.15■□□□□ 0.18
SCFD1-224ENST00000557713 KRT3P12035 628 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 SOX5P35711 763 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 GSCP56915 257 aaPredicted RBP16.15■□□□□ 0.18
SCFD1-224ENST00000557713 POLR2FP61218 127 aaKnown RBP16.15■□□□□ 0.18
SCFD1-224ENST00000557713 SKOR1P84550 965 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 CFHR1Q03591 330 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 C1QBPQ07021 282 aaKnown RBP16.15■□□□□ 0.18
SCFD1-224ENST00000557713 INO80DQ53TQ3 878 aaPredicted RBP16.15■□□□□ 0.18
SCFD1-224ENST00000557713 PRRT3Q5FWE3 981 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 C3orf38Q5JPI3 329 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 LRRC73Q5JTD7 316 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 C6orf132Q5T0Z8 1188 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 CRTC1Q6UUV9 634 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 VPS36Q86VN1 386 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 SLC35F3Q8IY50 421 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 PHACTR4Q8IZ21 702 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 TP53I13Q8NBR0 393 aaPredicted RBP16.15■□□□□ 0.18
SCFD1-224ENST00000557713 FAM172AQ8WUF8 416 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 CASKIN2Q8WXE0 1202 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 GLMNQ92990 594 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 WBP1Q96G27 269 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 GDAP1L1Q96MZ0 367 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 LRRC61Q9BV99 259 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 CLPBQ9H078 707 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 KLC2Q9H0B6 622 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 VPS16Q9H269 839 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 DKK3Q9UBP4 350 aa16.15■□□□□ 0.18
SCFD1-224ENST00000557713 MUSKO15146 869 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 EPHB6O15197 1021 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 CASC3O15234 703 aaKnown RBP16.14■□□□□ 0.17
SCFD1-224ENST00000557713 KLK10O43240 276 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 TSHRP16473 764 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 RBMS1P29558 406 aaKnown RBP16.14■□□□□ 0.17
SCFD1-224ENST00000557713 EIF4A3P38919 411 aaKnown RBP16.14■□□□□ 0.17
SCFD1-224ENST00000557713 RPIAP49247 311 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 RHDQ02161 417 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 RAD51Q06609 339 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 TMEM52BQ4KMG9 183 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 ARHGAP40Q5TG30 622 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 FAXCQ5TGI0 409 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 WDR59Q6PJI9 974 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 TRIM72Q6ZMU5 477 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 MACC1Q6ZN28 852 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 RBM44Q6ZP01 1051 aaKnown RBP16.14■□□□□ 0.17
SCFD1-224ENST00000557713 SLFN11Q7Z7L1 901 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 ZNF605Q86T29 641 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 PYROXD2Q8N2H3 581 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 RTL3Q8N8U3 475 aaKnown RBP16.14■□□□□ 0.17
SCFD1-224ENST00000557713 NETO2Q8NC67 525 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 CXorf40AQ8TE69 158 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 SNRNP27Q8WVK2 155 aaKnown RBP16.14■□□□□ 0.17
SCFD1-224ENST00000557713 CPEB1Q9BZB8 566 aaKnown RBP16.14■□□□□ 0.17
SCFD1-224ENST00000557713 SLC13A1Q9BZW2 595 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 NLRC4Q9NPP4 1024 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 PCDHGA8Q9Y5G5 932 aa16.14■□□□□ 0.17
SCFD1-224ENST00000557713 INSIG1O15503 277 aa16.13■□□□□ 0.17
SCFD1-224ENST00000557713 IGSF6O95976 241 aa16.13■□□□□ 0.17
SCFD1-224ENST00000557713 ANXA6P08133 673 aa16.13■□□□□ 0.17
SCFD1-224ENST00000557713 PLA2G2AP14555 144 aa16.13■□□□□ 0.17
SCFD1-224ENST00000557713 GPD1P21695 349 aa16.13■□□□□ 0.17
SCFD1-224ENST00000557713 YBEYP58557 167 aaPredicted RBP16.13■□□□□ 0.17
SCFD1-224ENST00000557713 KLHL40Q2TBA0 621 aa16.13■□□□□ 0.17
SCFD1-224ENST00000557713 CDKAL1Q5VV42 579 aa16.13■□□□□ 0.17
SCFD1-224ENST00000557713 PHF13Q86YI8 300 aaPredicted RBP16.13■□□□□ 0.17
SCFD1-224ENST00000557713 WDR48Q8TAF3 677 aa16.13■□□□□ 0.17
SCFD1-224ENST00000557713 ENOX1Q8TC92 643 aaKnown RBP16.13■□□□□ 0.17
SCFD1-224ENST00000557713 HCAR2Q8TDS4 363 aa16.13■□□□□ 0.17
SCFD1-224ENST00000557713 EPAS1Q99814 870 aa16.13■□□□□ 0.17
SCFD1-224ENST00000557713 WRAP53Q9BUR4 548 aaKnown RBP16.13■□□□□ 0.17
SCFD1-224ENST00000557713 C1QTNF7Q9BXJ2 289 aa16.13■□□□□ 0.17
SCFD1-224ENST00000557713 NUP62CLQ9H1M0 184 aa16.13■□□□□ 0.17
SCFD1-224ENST00000557713 FAM207AQ9NSI2 230 aaPredicted RBP16.13■□□□□ 0.17
SCFD1-224ENST00000557713 ADAM22Q9P0K1 906 aa16.13■□□□□ 0.17
SCFD1-224ENST00000557713 PADI4Q9UM07 663 aa16.13■□□□□ 0.17
SCFD1-224ENST00000557713 TCRBV5S1A1TA0A578 114 aa16.12■□□□□ 0.17
SCFD1-224ENST00000557713 PMS2P1A4D2B8 440 aa16.12■□□□□ 0.17
SCFD1-224ENST00000557713 SIGLEC16A6NMB1 481 aa16.12■□□□□ 0.17
SCFD1-224ENST00000557713 WASH4PA8MWX3 477 aa16.12■□□□□ 0.17
SCFD1-224ENST00000557713 CDRT15L2A8MXV6 281 aa16.12■□□□□ 0.17
SCFD1-224ENST00000557713 NTN3O00634 580 aaPredicted RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms