RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 COLGALT2Q8IYK4 626 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 IPCEF1Q8WWN9 437 aaPredicted RBP12.89□□□□□ -0.35
PTCH1-212ENST00000546744 REPS1Q96D71 796 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 CHCHD6Q9BRQ6 235 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 CDHR5Q9HBB8 845 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 ERVK-5Q9HDB9 667 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 F8VP50 259 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 SLITRK3O94933 977 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 PRLP01236 227 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 S100A6P06703 90 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 SERPINF2P08697 491 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 PORP16435 677 aaPredicted RBP12.89□□□□□ -0.35
PTCH1-212ENST00000546744 AOC1P19801 751 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 GSTM5P46439 218 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 ARHGEF7Q14155 803 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 MILR1Q7Z6M3 343 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 OFCC1Q8IZS5 231 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 UBR7Q8N806 425 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 TMIEQ8NEW7 156 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 FAM151AQ8WW52 585 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 LPGAT1Q92604 370 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 APBA2Q99767 749 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 PLA2G4CQ9UP65 541 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 SH3PXD2BA1X283 911 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 CYBBP04839 570 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 SUPT20HL2P0C7V6 817 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 PSMA1P25786 263 aaKnown RBP12.89□□□□□ -0.35
PTCH1-212ENST00000546744 SDC2P34741 201 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 KPNA1P52294 538 aaPredicted RBP12.89□□□□□ -0.35
PTCH1-212ENST00000546744 ARPP19P56211 112 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 PGS1Q32NB8 556 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 PPM1LQ5SGD2 360 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 SMYD5Q6GMV2 418 aa12.89□□□□□ -0.35
PTCH1-212ENST00000546744 POP1Q99575 1024 aaKnown RBP12.89□□□□□ -0.35
PTCH1-212ENST00000546744 TDRD1Q9BXT4 1180 aaKnown RBP12.89□□□□□ -0.35
PTCH1-212ENST00000546744 LSM7Q9UK45 103 aaKnown RBP12.89□□□□□ -0.35
PTCH1-212ENST00000546744 WTIPA6NIX2 430 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-212ENST00000546744 AZIN1O14977 448 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 PARNO95453 639 aaKnown RBP12.88□□□□□ -0.35
PTCH1-212ENST00000546744 CLTBP09497 229 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 C7P10643 843 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 RCVRNP35243 200 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 IDH2P48735 452 aaKnown RBP12.88□□□□□ -0.35
PTCH1-212ENST00000546744 PPP3CAQ08209 521 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 PUDPQ08623 228 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 ZNF484Q5JVG2 852 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 MARC1Q5VT66 337 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 UNC5AQ6ZN44 842 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 FAM131BQ86XD5 332 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 C10orf107Q8IVU9 208 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 FBXO30Q8TB52 745 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 FNDC8Q8TC99 324 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 PTCD2Q8WV60 388 aaKnown RBP12.88□□□□□ -0.35
PTCH1-212ENST00000546744 TNFRSF25Q93038 417 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 NXNL1Q96CM4 212 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 TBL1YQ9BQ87 522 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 RBM22Q9NW64 420 aaKnown RBP eCLIP12.88□□□□□ -0.35
PTCH1-212ENST00000546744 GPATCH2LQ9NWQ4 482 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 MKLN1Q9UL63 735 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 FAM189A1O60320 539 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 RPLP2P05387 115 aaKnown RBP12.88□□□□□ -0.35
PTCH1-212ENST00000546744 ZNF7P17097 686 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-212ENST00000546744 EPHA3P29320 983 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 HPCAL1P37235 193 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 AIF1P55008 147 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 NOMO1Q15155 1222 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 ZNF423Q2M1K9 1284 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 ASTE1Q2TB18 679 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-212ENST00000546744 ZIK1Q3SY52 487 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-212ENST00000546744 NEK5Q6P3R8 708 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 TXNRD3Q86VQ6 643 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 PDSS2Q86YH6 399 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 DNAJB8Q8NHS0 232 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 GTF3C2Q8WUA4 911 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-212ENST00000546744 BTN2A2Q8WVV5 523 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 HTRA1Q92743 480 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 SNCAIPQ9Y6H5 919 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 ISPDA4D126 451 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 H3BN98 237 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 ANGPTL1O95841 491 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 MSL3P1P0C860 447 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 YWHAZP63104 245 aaKnown RBP12.88□□□□□ -0.35
PTCH1-212ENST00000546744 SPP2Q13103 211 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 USP4Q13107 963 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 RNASEH2BQ5TBB1 312 aaKnown RBP12.88□□□□□ -0.35
PTCH1-212ENST00000546744 AADACL2Q6P093 401 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 DEFB132Q7Z7B7 95 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 DNAAF5Q86Y56 855 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 APOBEC3FQ8IUX4 373 aaKnown RBP12.88□□□□□ -0.35
PTCH1-212ENST00000546744 ZZZ3Q8IYH5 903 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 FAR1Q8WVX9 515 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 CITED4Q96RK1 184 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 TUBA1CQ9BQE3 449 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 HGH1Q9BTY7 390 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 CAB39LQ9H9S4 337 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 CFL2Q9Y281 166 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 FAM92AA1XBS5 289 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 SSNA1O43805 119 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 PLIN3O60664 434 aa12.88□□□□□ -0.35
PTCH1-212ENST00000546744 NDUFS2O75306 463 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms