RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 TIMP2P16035 220 aa22.98■■□□□ 1.27
SFSWAP-204ENST00000535399 SCNN1BP51168 640 aa22.98■■□□□ 1.27
SFSWAP-204ENST00000535399 AP1S1P61966 158 aa22.98■■□□□ 1.27
SFSWAP-204ENST00000535399 LMNB2Q03252 620 aa22.98■■□□□ 1.27
SFSWAP-204ENST00000535399 PPIDQ08752 370 aaKnown RBP22.98■■□□□ 1.27
SFSWAP-204ENST00000535399 NEK5Q6P3R8 708 aa22.98■■□□□ 1.27
SFSWAP-204ENST00000535399 PEX26Q7Z412 305 aa22.98■■□□□ 1.27
SFSWAP-204ENST00000535399 CAMK1DQ8IU85 385 aa22.98■■□□□ 1.27
SFSWAP-204ENST00000535399 CCDC13Q8IYE1 715 aa22.98■■□□□ 1.27
SFSWAP-204ENST00000535399 CCNYQ8ND76 341 aa22.98■■□□□ 1.27
SFSWAP-204ENST00000535399 HCAR2Q8TDS4 363 aa22.98■■□□□ 1.27
SFSWAP-204ENST00000535399 RAB7BQ96AH8 199 aa22.98■■□□□ 1.27
SFSWAP-204ENST00000535399 ZNF641Q96N77 438 aaPredicted RBP22.98■■□□□ 1.27
SFSWAP-204ENST00000535399 LGMNQ99538 433 aa22.98■■□□□ 1.27
SFSWAP-204ENST00000535399 GUCA1BQ9UMX6 200 aa22.98■■□□□ 1.27
SFSWAP-204ENST00000535399 SLC6A14Q9UN76 642 aa22.98■■□□□ 1.27
SFSWAP-204ENST00000535399 LNP1A1A4G5 178 aa22.97■■□□□ 1.27
SFSWAP-204ENST00000535399 NRDCO43847 1150 aa22.97■■□□□ 1.27
SFSWAP-204ENST00000535399 GDF9O60383 454 aa22.97■■□□□ 1.27
SFSWAP-204ENST00000535399 RNGTTO60942 597 aaKnown RBP22.97■■□□□ 1.27
SFSWAP-204ENST00000535399 MAPK8P45983 427 aa22.97■■□□□ 1.27
SFSWAP-204ENST00000535399 RWDD2BP57060 319 aa22.97■■□□□ 1.27
SFSWAP-204ENST00000535399 COPS2P61201 443 aa22.97■■□□□ 1.27
SFSWAP-204ENST00000535399 MAXP61244 160 aa22.97■■□□□ 1.27
SFSWAP-204ENST00000535399 PDK1Q15118 436 aa22.97■■□□□ 1.27
SFSWAP-204ENST00000535399 CCDC50Q8IVM0 306 aa22.97■■□□□ 1.27
SFSWAP-204ENST00000535399 NUDCD1Q96RS6 583 aa22.97■■□□□ 1.27
SFSWAP-204ENST00000535399 NUSAP1Q9BXS6 441 aaKnown RBP22.97■■□□□ 1.27
SFSWAP-204ENST00000535399 ATP13A3Q9H7F0 1226 aa22.97■■□□□ 1.27
SFSWAP-204ENST00000535399 TM9SF3Q9HD45 589 aa22.97■■□□□ 1.27
SFSWAP-204ENST00000535399 NT5MQ9NPB1 228 aa22.97■■□□□ 1.27
SFSWAP-204ENST00000535399 FSCN3Q9NQT6 498 aa22.97■■□□□ 1.27
SFSWAP-204ENST00000535399 SAE1Q9UBE0 346 aaPredicted RBP22.97■■□□□ 1.27
SFSWAP-204ENST00000535399 ZFR2Q9UPR6 939 aaKnown RBP22.97■■□□□ 1.27
SFSWAP-204ENST00000535399 A0A1W2PQU0 124 aa22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 AREL1O15033 823 aa22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 DDX3YO15523 660 aaKnown RBP22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 CCNB1P14635 433 aa22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 PECAM1P16284 738 aaPredicted RBP22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 TGM2P21980 687 aa22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 MAT2AP31153 395 aaKnown RBP22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 NR2C2P49116 596 aa22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 ZNF284Q2VY69 593 aa22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 AASDHQ4L235 1098 aaPredicted RBP22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 HORMAD1Q86X24 394 aa22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 ZSWIM9Q86XI8 627 aa22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 ECHDC3Q96DC8 303 aa22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 PDLIM2Q96JY6 352 aa22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 HERPUD2Q9BSE4 406 aa22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 HEMGNQ9BXL5 484 aa22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 NOD2Q9HC29 1040 aa22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 RBM22Q9NW64 420 aaKnown RBP eCLIP22.96■■□□□ 1.275e-11■■■■■ 35.9
SFSWAP-204ENST00000535399 PACSIN2Q9UNF0 486 aaPredicted RBP22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 ITM2BQ9Y287 266 aa22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 CEP192Q8TEP8 1941 aa22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 CEP250Q9BV73 2442 aa22.96■■□□□ 1.27
SFSWAP-204ENST00000535399 MIF4GDA9UHW6 222 aaKnown RBP22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 PRR5-ARHGAP8B1AHC4 643 aa22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 TRAFD1O14545 582 aaPredicted RBP22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 PPP1R12AO14974 1030 aaPredicted RBP22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 PYGMP11217 842 aa22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 SERPINA4P29622 427 aa22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 PTPN7P35236 360 aa22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 BCL2L1Q07817 233 aa22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 TMEM259Q4ZIN3 620 aa22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 LRRC73Q5JTD7 316 aa22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 BRAT1Q6PJG6 821 aa22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 BBS12Q6ZW61 710 aa22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 TTC7BQ86TV6 843 aa22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 PRPF39Q86UA1 669 aaKnown RBP22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 SLC6A18Q96N87 628 aa22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 BRD8Q9H0E9 1235 aa22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 SCUBE2Q9NQ36 999 aa22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 AMACRQ9UHK6 382 aa22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 GGT7Q9UJ14 662 aa22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 EFR3BQ9Y2G0 817 aa22.95■■□□□ 1.26
SFSWAP-204ENST00000535399 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 KCNK1O00180 336 aa22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 WNT9AO14904 365 aa22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 PCDH8O95206 1070 aa22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 ENGP17813 658 aa22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 ITIH2P19823 946 aa22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 NUDT1P36639 197 aa22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 IFI35P80217 286 aaPredicted RBP22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 ARHGAP8P85298 464 aa22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 RALGPS1Q5JS13 557 aa22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 SEL1L3Q68CR1 1132 aa22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 ALG1LQ6GMV1 187 aa22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 AADACL2Q6P093 401 aa22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 B4GALNT4Q76KP1 1039 aa22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 BZW1Q7L1Q6 419 aaKnown RBP22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 ANP32BQ92688 251 aaKnown RBP22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 HES6Q96HZ4 224 aa22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 IL12RB2Q99665 862 aa22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 EDEM2Q9BV94 578 aa22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 OSBPL8Q9BZF1 889 aa22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 LZTFL1Q9NQ48 299 aa22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 PPP2R2CQ9Y2T4 447 aa22.94■■□□□ 1.26
SFSWAP-204ENST00000535399 LOC105378220A0A1B0GUY1 285 aaPredicted RBP22.93■■□□□ 1.26
SFSWAP-204ENST00000535399 UPK3BL1B0FP48 263 aa22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms