RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	ATXN1	P54253	815 aa	Known RBP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	CACNA2D1	P54289	1103 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	ATP6V0D1	P61421	351 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	ROR1	Q01973	937 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	TBL3	Q12788	808 aa	Known RBP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	ITGB3BP	Q13352	177 aa	Predicted RBP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	CUL1	Q13616	776 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	RGS21	Q2M5E4	152 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	KLHL38	Q2WGJ6	581 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	INO80D	Q53TQ3	878 aa	Predicted RBP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	HERC4	Q5GLZ8	1057 aa	Predicted RBP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	ARHGAP40	Q5TG30	622 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	NAA35	Q5VZE5	725 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	SNRNP48	Q6IEG0	339 aa	Known RBP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	ANO7	Q6IWH7	933 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	METTL2B	Q6P1Q9	378 aa	Known RBP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	KSR2	Q6VAB6	950 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	ZNF704	Q6ZNC4	412 aa	Predicted RBP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	IDO2	Q6ZQW0	420 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	BNIPL	Q7Z465	357 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	MAP7D3	Q8IWC1	876 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	MPP5	Q8N3R9	675 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	MLKL	Q8NB16	471 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	PPHLN1	Q8NEY8	458 aa	Known RBP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	OR10Z1	Q8NGY1	313 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	FNBP1	Q96RU3	617 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	TIMP4	Q99727	224 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	SDF4	Q9BRK5	362 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	CENPO	Q9BU64	300 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	BRIP1	Q9BX63	1249 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	MRPL1	Q9BYD6	325 aa	Known RBP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	CRNKL1	Q9BZJ0	848 aa	Known RBP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	FAM83D	Q9H4H8	585 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	KAT14	Q9H8E8	782 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	SYNPO2L	Q9H987	977 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	PFDN4	Q9NQP4	134 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	STARD7	Q9NQZ5	370 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	DDX19A	Q9NUU7	478 aa	Known RBP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	SLC17A6	Q9P2U8	582 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	EXTL2	Q9UBQ6	330 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	SEC63	Q9UGP8	760 aa	Known RBP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	HMGXB4	Q9UGU5	601 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	CAPN11	Q9UMQ6	739 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	IFT52	Q9Y366	437 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	CAB39	Q9Y376	341 aa	Predicted RBP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	L3MBTL1	Q9Y468	752 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	ENTPD2	Q9Y5L3	495 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	EFCAB5	A4FU69	1503 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	AQR	O60306	1485 aa	Known RBP eCLIP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	PTPRT	O14522	1441 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	SH3PXD2B	A1X283	911 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	MAGEB16	A2A368	324 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	SNTN	A6NMZ2	147 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	VWC2L	B2RUY7	222 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	STX16-NPEPL1	H3BU86	382 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	KPNA5	O15131	536 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	AP5Z1	O43299	807 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	JRK	O75564	520 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	RET	P07949	1114 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	TXN	P10599	105 aa	Known RBP	5.76	□□□□□ -1.49
CD44-231	ENST00000531110	CHRNB1	P11230	501 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	SLC5A1	P13866	664 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	HOXA6	P31267	233 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	PHB	P35232	272 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	SLC1A1	P43005	524 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	HSD17B4	P51659	736 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	LIMK1	P53667	647 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	PLTP	P55058	493 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	POLE2	P56282	527 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	RPS16	P62249	146 aa	Known RBP	5.76	□□□□□ -1.49
CD44-231	ENST00000531110	RPP38	P78345	283 aa	Known RBP	5.76	□□□□□ -1.49
CD44-231	ENST00000531110	RELA	Q04206	551 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	KRT17	Q04695	432 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	KLHL30	Q0D2K2	578 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	DAG1	Q14118	895 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	ITIH4	Q14624	930 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	PSMD6	Q15008	389 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110		Q3ZCU0	254 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	ACCSL	Q4AC99	568 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	TDRD12	Q587J7	1177 aa	Known RBP	5.76	□□□□□ -1.49
CD44-231	ENST00000531110	MAP3K21	Q5TCX8	1036 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	RGS7BP	Q6MZT1	257 aa	Predicted RBP	5.76	□□□□□ -1.49
CD44-231	ENST00000531110	TATDN1	Q6P1N9	297 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	SHQ1	Q6PI26	577 aa	Known RBP	5.76	□□□□□ -1.49
CD44-231	ENST00000531110	DHRS4L2	Q6PKH6	230 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	TOGARAM2	Q6ZUX3	1019 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	WDR53	Q7Z5U6	358 aa	Predicted RBP	5.76	□□□□□ -1.49
CD44-231	ENST00000531110	NET1	Q7Z628	596 aa	Predicted RBP	5.76	□□□□□ -1.49
CD44-231	ENST00000531110	PEG10	Q86TG7	708 aa	Known RBP	5.76	□□□□□ -1.49
CD44-231	ENST00000531110	ADCK1	Q86TW2	530 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	ZNF677	Q86XU0	584 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	CD302	Q8IX05	232 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	IFT20	Q8IY31	132 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	YAF2	Q8IY57	180 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	5.76	□□□□□ -1.49
CD44-231	ENST00000531110	ZBED8	Q8IZ13	594 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	LIX1	Q8N485	282 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	ATP6V0D2	Q8N8Y2	350 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	SIMC1	Q8NDZ2	872 aa		5.76	□□□□□ -1.49
CD44-231	ENST00000531110	OSCP1	Q8WVF1	389 aa		5.76	□□□□□ -1.49

Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms