RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 PGFP49763 221 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 CLCN5P51795 746 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 CCNHP51946 323 aaPredicted RBP21.43■■□□□ 1.02
VPS28-205ENST00000526204 MED21Q13503 144 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 RFTN1Q14699 578 aaPredicted RBP21.43■■□□□ 1.02
VPS28-205ENST00000526204 PDCD2Q16342 344 aaPredicted RBP21.43■■□□□ 1.02
VPS28-205ENST00000526204 LRRC36Q1X8D7 754 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 LPCAT4Q643R3 524 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 KLC3Q6P597 504 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 KDELC2Q7Z4H8 507 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 GALNT7Q86SF2 657 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 C14orf80Q86SX3 495 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 MON1AQ86VX9 555 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 SPATA6LQ8N4H0 392 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 AFAP1L2Q8N4X5 818 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 TXNDC5Q8NBS9 432 aaKnown RBP21.43■■□□□ 1.02
VPS28-205ENST00000526204 CEP70Q8NHQ1 597 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 TSPAN17Q96FV3 270 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 IMP4Q96G21 291 aaKnown RBP21.43■■□□□ 1.02
VPS28-205ENST00000526204 CDRT15Q96T59 188 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 PSMD13Q9UNM6 376 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 A0A1W2PQH9 124 aa21.42■■□□□ 1.02
VPS28-205ENST00000526204 PAPSS2O95340 614 aaPredicted RBP21.42■■□□□ 1.02
VPS28-205ENST00000526204 PEX2P28328 305 aa21.42■■□□□ 1.02
VPS28-205ENST00000526204 LEPRP48357 1165 aaKnown RBP21.42■■□□□ 1.02
VPS28-205ENST00000526204 SERPINH1P50454 418 aaKnown RBP21.42■■□□□ 1.02
VPS28-205ENST00000526204 HUNKP57058 714 aa21.42■■□□□ 1.02
VPS28-205ENST00000526204 ART3Q13508 389 aa21.42■■□□□ 1.02
VPS28-205ENST00000526204 PIGGQ5H8A4 983 aa21.42■■□□□ 1.02
VPS28-205ENST00000526204 SH2D4BQ5SQS7 431 aa21.42■■□□□ 1.02
VPS28-205ENST00000526204 ZFP1Q6P2D0 407 aa21.42■■□□□ 1.02
VPS28-205ENST00000526204 RCN3Q96D15 328 aa21.42■■□□□ 1.02
VPS28-205ENST00000526204 NMUR1Q9HB89 426 aa21.42■■□□□ 1.02
VPS28-205ENST00000526204 EML4Q9HC35 981 aaKnown RBP21.42■■□□□ 1.02
VPS28-205ENST00000526204 ATP13A1Q9HD20 1204 aa21.42■■□□□ 1.02
VPS28-205ENST00000526204 IGSF5Q9NSI5 407 aa21.42■■□□□ 1.02
VPS28-205ENST00000526204 SCN10AQ9Y5Y9 1956 aa21.42■■□□□ 1.02
VPS28-205ENST00000526204 ITGB1P05556 798 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 CYBAP13498 195 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 PEX19P40855 299 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 IRX1P78414 480 aaPredicted RBP21.41■■□□□ 1.02
VPS28-205ENST00000526204 PCSK7Q16549 785 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 SFT2D3Q587I9 215 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 RNF220Q5VTB9 566 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 TMEM198Q66K66 360 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 CNSTQ6PJW8 725 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 TMEM126BQ8IUX1 230 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 BTBD9Q96Q07 612 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 SCML2Q9UQR0 700 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 PEX11BO96011 259 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 JUNP05412 331 aaKnown RBP21.41■■□□□ 1.02
VPS28-205ENST00000526204 FESP07332 822 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 RBP1P09455 135 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 RHOQP17081 205 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 LPIN1Q14693 890 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 ZNF423Q2M1K9 1284 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 OGFRL1Q5TC84 451 aaPredicted RBP21.41■■□□□ 1.02
VPS28-205ENST00000526204 MSANTD2Q6P1R3 559 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 SCN4BQ8IWT1 228 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 PQLC1Q8N2U9 271 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 ARHGAP18Q8N392 663 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 GBP5Q96PP8 586 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 NOL6Q9H6R4 1146 aaKnown RBP21.41■■□□□ 1.02
VPS28-205ENST00000526204 NUDT5Q9UKK9 219 aa21.41■■□□□ 1.02
VPS28-205ENST00000526204 COPG1Q9Y678 874 aaKnown RBP21.41■■□□□ 1.02
VPS28-205ENST00000526204 LTA4HP09960 611 aaKnown RBP21.4■■□□□ 1.02
VPS28-205ENST00000526204 HSPA1AP0DMV8 641 aaKnown RBP21.4■■□□□ 1.02
VPS28-205ENST00000526204 HSPA1BP0DMV9 641 aaKnown RBP21.4■■□□□ 1.02
VPS28-205ENST00000526204 THOP1P52888 689 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 NKX3-2P78367 333 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 PFKPQ01813 784 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 ILF2Q12905 390 aaKnown RBP21.4■■□□□ 1.02
VPS28-205ENST00000526204 FLOT2Q14254 428 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 CSHL1Q14406 222 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 SLC14A2Q15849 920 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 PSMD5Q16401 504 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 SLC39A12Q504Y0 691 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 TECRLQ5HYJ1 363 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 PIK3R6Q5UE93 754 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 MARC1Q5VT66 337 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 MFSD14CQ5VZR4 134 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 DCP1BQ8IZD4 617 aaKnown RBP21.4■■□□□ 1.02
VPS28-205ENST00000526204 SLC39A13Q96H72 371 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 TUBGCP5Q96RT8 1024 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 FBXO44Q9H4M3 255 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 WDR41Q9HAD4 459 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 SLC24A3Q9HC58 644 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 TRPM7Q96QT4 1865 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 INPPL1O15357 1258 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 AHCYL1O43865 530 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 IPO13O94829 963 aaKnown RBP21.4■■□□□ 1.02
VPS28-205ENST00000526204 ZCCHC18P0CG32 403 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 PIM1P11309 404 aaPredicted RBP21.4■■□□□ 1.02
VPS28-205ENST00000526204 CD1EP15812 388 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 VCLP18206 1134 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 AQP4P55087 323 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 MSLNQ13421 630 aaPredicted RBP21.4■■□□□ 1.02
VPS28-205ENST00000526204 CST9Q5W186 159 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 RASAL3Q86YV0 1011 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 ICA1LQ8NDH6 482 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms