RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, human

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG4A-208	ENST00000489247	YTHDF3	Q7Z739	585 aa	Known RBP	5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	NLRP14	Q86W24	1093 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	FAM72B	Q86X60	149 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	IGDCC3	Q8IVU1	814 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	ZNF683	Q8IZ20	524 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	LRRC43	Q8N309	656 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	DTWD2	Q8NBA8	298 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	FBXO36	Q8NEA4	188 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	CCDC110	Q8TBZ0	833 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	BCAS4	Q8TDM0	211 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	SH3TC2	Q8TF17	1288 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	SLC44A1	Q8WWI5	657 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	UBE2F	Q969M7	185 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	SGSM3	Q96HU1	749 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	SIGLEC10	Q96LC7	697 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	SERPINB11	Q96P15	392 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	FAM193B	Q96PV7	902 aa	Predicted RBP	5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	EBNA1BP2	Q99848	306 aa	Known RBP	5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	NAT9	Q9BTE0	207 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	RHOBTB2	Q9BYZ6	727 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	MAGEB5	Q9BZ81	275 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	MKRN2	Q9H000	416 aa	Known RBP	5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	TKTL2	Q9H0I9	626 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	PRDM12	Q9H4Q4	367 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	WDCP	Q9H6R7	721 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	RC3H2	Q9HBD1	1191 aa	Known RBP	5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	OLA1	Q9NTK5	396 aa	Known RBP	5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	DNAJC17	Q9NVM6	304 aa	Known RBP	5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	MKS1	Q9NXB0	559 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	MOCS1	Q9NZB8	636 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	PPARGC1A	Q9UBK2	798 aa	Known RBP	5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	DNAJB4	Q9UDY4	337 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	MAFF	Q9ULX9	164 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	SMG5	Q9UPR3	1016 aa	Known RBP	5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	MFHAS1	Q9Y4C4	1052 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	TRIP11	Q15643	1979 aa		5.67	□□□□□ -1.5
ATG4A-208	ENST00000489247	IGLV3-10	A0A075B6K4	115 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	TCRBV9S1A1T	A0A576	114 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	SHISA3	A0PJX4	238 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	TMEM120B	A0PK00	339 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	MTMR11	A4FU01	709 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	FAM159B	A6NKW6	160 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	AP3B1	O00203	1094 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	RNF103	O00237	685 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	ASMTL	O95671	621 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	AP2A1	O95782	977 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	EPHX1	P07099	455 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	HAPLN1	P10915	354 aa	Predicted RBP	5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	CHN1	P15882	459 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	DRD4	P21917	467 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	FUT4	P22083	530 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	CCNC	P24863	283 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	PTPN3	P26045	913 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	GARS	P41250	739 aa	Known RBP	5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	ELK3	P41970	407 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	SLCO1A2	P46721	670 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	MLLT6	P55198	1093 aa	Predicted RBP	5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	HNRNPH2	P55795	449 aa	Known RBP	5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	RPL10A	P62906	217 aa	Known RBP	5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	SARNP	P82979	210 aa	Known RBP	5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	SLC18A2	Q05940	514 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	DNAJC3	Q13217	504 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	NME3	Q13232	169 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	C5orf22	Q49AR2	442 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	CTXN3	Q4LDR2	81 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	SLC39A12	Q504Y0	691 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	FAM171A1	Q5VUB5	890 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	BTBD8	Q5XKL5	378 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	NUGGC	Q68CJ6	796 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	CNKSR3	Q6P9H4	555 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	KLHDC10	Q6PID8	442 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	C6orf89	Q6UWU4	347 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	TIFAB	Q6ZNK6	161 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	ARHGEF18	Q6ZSZ5	1173 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	C3orf62	Q6ZUJ4	267 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	B4GALNT4	Q76KP1	1039 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	PIGW	Q7Z7B1	504 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	CCDC117	Q8IWD4	279 aa	Predicted RBP	5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	ARHGAP12	Q8IWW6	846 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	ZNF567	Q8N184	647 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	UMODL1-AS1	Q8N2C9	162 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	NPW	Q8N729	165 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	POU5F2	Q8N7G0	328 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	RTL3	Q8N8U3	475 aa	Known RBP	5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	SCAMP5	Q8TAC9	235 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	HASPIN	Q8TF76	798 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	ZNF473	Q8WTR7	871 aa	Known RBP	5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	DCAKD	Q8WVC6	231 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	CKAP2	Q8WWK9	683 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	ASB11	Q8WXH4	323 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	OVCA2	Q8WZ82	227 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	CASP10	Q92851	521 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	TTC17	Q96AE7	1141 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	ZBTB9	Q96C00	473 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	ZNF689	Q96CS4	500 aa	Predicted RBP	5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	TBC1D31	Q96DN5	1066 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	CHMP6	Q96FZ7	201 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	ZNF333	Q96JL9	665 aa		5.66	□□□□□ -1.5
ATG4A-208	ENST00000489247	FCRL2	Q96LA5	508 aa	Predicted RBP	5.66	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms