RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 LRRC49Q8IUZ0 686 aa14.93□□□□□ -0.02
USP4-212ENST00000486549 LRRC8AQ8IWT6 810 aa14.93□□□□□ -0.02
USP4-212ENST00000486549 KATNAL2Q8IYT4 538 aa14.93□□□□□ -0.02
USP4-212ENST00000486549 CCNYQ8ND76 341 aa14.93□□□□□ -0.02
USP4-212ENST00000486549 C1orf216Q8TAB5 229 aa14.93□□□□□ -0.02
USP4-212ENST00000486549 KIAA1524Q8TCG1 905 aa14.93□□□□□ -0.02
USP4-212ENST00000486549 PSKH2Q96QS6 385 aa14.93□□□□□ -0.02
USP4-212ENST00000486549 ORAI3Q9BRQ5 295 aa14.93□□□□□ -0.02
USP4-212ENST00000486549 CPEB1Q9BZB8 566 aaKnown RBP14.93□□□□□ -0.02
USP4-212ENST00000486549 NT5MQ9NPB1 228 aa14.93□□□□□ -0.02
USP4-212ENST00000486549 AASDHPPTQ9NRN7 309 aa14.93□□□□□ -0.02
USP4-212ENST00000486549 DTLQ9NZJ0 730 aa14.93□□□□□ -0.02
USP4-212ENST00000486549 GGT7Q9UJ14 662 aa14.93□□□□□ -0.02
USP4-212ENST00000486549 ITM2BQ9Y287 266 aa14.93□□□□□ -0.02
USP4-212ENST00000486549 ADGRG1Q9Y653 693 aa14.93□□□□□ -0.02
USP4-212ENST00000486549 CACNA1EQ15878 2313 aa14.93□□□□□ -0.02
USP4-212ENST00000486549 TRPM6Q9BX84 2022 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 A0A1B0GVT2 93 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 NEMP1O14524 444 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 NEBLO76041 1014 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 ZRANB2O95218 330 aaKnown RBP eCLIP14.92□□□□□ -0.02
USP4-212ENST00000486549 ADRB1P08588 477 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 PRLRP16471 622 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 ZFXP17010 805 aaPredicted RBP14.92□□□□□ -0.02
USP4-212ENST00000486549 SERPINA4P29622 427 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 CTNNA1P35221 906 aaKnown RBP14.92□□□□□ -0.02
USP4-212ENST00000486549 CSNK1DP48730 415 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 AFF3P51826 1226 aaKnown RBP14.92□□□□□ -0.02
USP4-212ENST00000486549 BCL2L1Q07817 233 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 ITKQ08881 620 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 GRIK2Q13002 908 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 GRM3Q14832 879 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 TEAD4Q15561 434 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 SETMARQ53H47 684 aaPredicted RBP14.92□□□□□ -0.02
USP4-212ENST00000486549 SEL1L3Q68CR1 1132 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 TIGD7Q6NT04 549 aaPredicted RBP14.92□□□□□ -0.02
USP4-212ENST00000486549 TTC7BQ86TV6 843 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 PGBD5Q8N414 524 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.92□□□□□ -0.02
USP4-212ENST00000486549 OR2I1PQ8NGU4 316 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 RBM41Q96IZ5 413 aaKnown RBP14.92□□□□□ -0.02
USP4-212ENST00000486549 SERAC1Q96JX3 654 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 TUBGCP5Q96RT8 1024 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 MYOCQ99972 504 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 SUV39H2Q9H5I1 410 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 ATP13A3Q9H7F0 1226 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 SCUBE2Q9NQ36 999 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 TTLL3Q9Y4R7 772 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 FADS3Q9Y5Q0 445 aa14.92□□□□□ -0.02
USP4-212ENST00000486549 TMEM131Q92545 1883 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 C4orf47A7E2U8 309 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 C10orf142B7Z368 130 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 ARHGAP33O14559 1287 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 TM4SF5O14894 197 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 MATN3O15232 486 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 SLC31A1O15431 190 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 LATO43561 262 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 NRDCO43847 1150 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 CST8O60676 142 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 SYPP08247 313 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 ITIH2P19823 946 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 CCNCP24863 283 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 HSPA9P38646 679 aaKnown RBP14.91□□□□□ -0.02
USP4-212ENST00000486549 AP1S1P61966 158 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 CCZ1BP86790 482 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 CCZ1P86791 482 aaPredicted RBP14.91□□□□□ -0.02
USP4-212ENST00000486549 NSUN2Q08J23 767 aaKnown RBP eCLIP14.91□□□□□ -0.02
USP4-212ENST00000486549 TFDP2Q14188 446 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 UAP1L1Q3KQV9 507 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 B4GALNT4Q76KP1 1039 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 PEX26Q7Z412 305 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 HORMAD1Q86X24 394 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 CCDC13Q8IYE1 715 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 RCOR2Q8IZ40 523 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 LRRC57Q8N9N7 239 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 EXD1Q8NHP7 514 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 RAB7BQ96AH8 199 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 HAUS1Q96CS2 278 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 HDAC11Q96DB2 347 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 LGMNQ99538 433 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 MGME1Q9BQP7 344 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 FZD3Q9NPG1 666 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 DKK3Q9UBP4 350 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 AMFRQ9UKV5 643 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 TPX2Q9ULW0 747 aaKnown RBP14.91□□□□□ -0.02
USP4-212ENST00000486549 GUCA1BQ9UMX6 200 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 ZFR2Q9UPR6 939 aaKnown RBP14.91□□□□□ -0.02
USP4-212ENST00000486549 CA5BQ9Y2D0 317 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 DNAH14Q0VDD8 3507 aa14.91□□□□□ -0.02
USP4-212ENST00000486549 hCG_1818297A0A087WSY0 165 aa14.9□□□□□ -0.02
USP4-212ENST00000486549 CCDC66A2RUB6 948 aa14.9□□□□□ -0.02
USP4-212ENST00000486549 KCNK1O00180 336 aa14.9□□□□□ -0.02
USP4-212ENST00000486549 WNT9AO14904 365 aa14.9□□□□□ -0.02
USP4-212ENST00000486549 SPINT1O43278 529 aa14.9□□□□□ -0.02
USP4-212ENST00000486549 AP1G1O43747 822 aa14.9□□□□□ -0.02
USP4-212ENST00000486549 FTCDO95954 541 aa14.9□□□□□ -0.02
USP4-212ENST00000486549 PRKCGP05129 697 aa14.9□□□□□ -0.02
USP4-212ENST00000486549 TIMP2P16035 220 aa14.9□□□□□ -0.02
USP4-212ENST00000486549 CTNNA2P26232 953 aa14.9□□□□□ -0.02
USP4-212ENST00000486549 GRIA4P48058 902 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms