RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 CALCOCO2Q13137 446 aa11.11□□□□□ -0.63
SCN9A-205ENST00000454569 CUL1Q13616 776 aa11.11□□□□□ -0.63
SCN9A-205ENST00000454569 TPSAB1Q15661 275 aa11.11□□□□□ -0.63
SCN9A-205ENST00000454569 ZSWIM9Q86XI8 627 aa11.11□□□□□ -0.63
SCN9A-205ENST00000454569 CAMK1DQ8IU85 385 aa11.11□□□□□ -0.63
SCN9A-205ENST00000454569 ZNF557Q8N988 423 aaPredicted RBP11.11□□□□□ -0.63
SCN9A-205ENST00000454569 DNASE1L2Q92874 299 aa11.11□□□□□ -0.63
SCN9A-205ENST00000454569 EXOC4Q96A65 974 aa11.11□□□□□ -0.63
SCN9A-205ENST00000454569 ZBTB9Q96C00 473 aa11.11□□□□□ -0.63
SCN9A-205ENST00000454569 SERPINB12Q96P63 405 aa11.11□□□□□ -0.63
SCN9A-205ENST00000454569 NECAB3Q96P71 396 aaPredicted RBP11.11□□□□□ -0.63
SCN9A-205ENST00000454569 NUDCD1Q96RS6 583 aa11.11□□□□□ -0.63
SCN9A-205ENST00000454569 FICDQ9BVA6 458 aa11.11□□□□□ -0.63
SCN9A-205ENST00000454569 SLC2A4RGQ9NR83 387 aa11.11□□□□□ -0.63
SCN9A-205ENST00000454569 CACNA2D2Q9NY47 1150 aa11.11□□□□□ -0.63
SCN9A-205ENST00000454569 CA14Q9ULX7 337 aa11.11□□□□□ -0.63
SCN9A-205ENST00000454569 CHKBQ9Y259 395 aa11.11□□□□□ -0.63
SCN9A-205ENST00000454569 NCOR1O75376 2440 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 KRBA1A5PL33 1030 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 E7EVH7 732 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 SUN1O94901 812 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 PRKCGP05129 697 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 CTSLP07711 333 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 SRPRAP08240 638 aaKnown RBP11.1□□□□□ -0.63
SCN9A-205ENST00000454569 ATXN1LP0C7T5 689 aaKnown RBP11.1□□□□□ -0.63
SCN9A-205ENST00000454569 MSLNQ13421 630 aaPredicted RBP11.1□□□□□ -0.63
SCN9A-205ENST00000454569 MYLK3Q32MK0 819 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 CARD16Q5EG05 197 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 TMEM196Q5HYL7 178 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 CERCAMQ5T4B2 595 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 C4orf22Q6V702 233 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 RANBP10Q6VN20 620 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 HOOK3Q86VS8 718 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 CCDC25Q86WR0 208 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 RALGPS2Q86X27 583 aaPredicted RBP11.1□□□□□ -0.63
SCN9A-205ENST00000454569 ZCCHC9Q8N567 271 aaKnown RBP11.1□□□□□ -0.63
SCN9A-205ENST00000454569 SLC25A41Q8N5S1 370 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 OR2AP1Q8NGE2 309 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 TRIB3Q96RU7 358 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 TXLNGYQ9BZA5 131 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 TMEM245Q9H330 911 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 PLAC1Q9HBJ0 212 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 CASS4Q9NQ75 786 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 THAP10Q9P2Z0 257 aaPredicted RBP11.1□□□□□ -0.63
SCN9A-205ENST00000454569 HECAQ9UBI9 543 aaPredicted RBP11.1□□□□□ -0.63
SCN9A-205ENST00000454569 DUSP12Q9UNI6 340 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 SHOC2Q9UQ13 582 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 FAM50BQ9Y247 325 aa11.1□□□□□ -0.63
SCN9A-205ENST00000454569 MTF2Q9Y483 593 aaPredicted RBP11.1□□□□□ -0.63
SCN9A-205ENST00000454569 LOC285095A0A1B0GVY8 99 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.09□□□□□ -0.63
SCN9A-205ENST00000454569 TRAFD1O14545 582 aaPredicted RBP11.09□□□□□ -0.63
SCN9A-205ENST00000454569 SIN3BO75182 1162 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 ANXA9O76027 345 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 ASLP04424 464 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 ATP5BP06576 529 aaKnown RBP11.09□□□□□ -0.63
SCN9A-205ENST00000454569 SLC8A1P32418 973 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 MAGEA3P43357 314 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 LMAN1P49257 510 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 CCNHP51946 323 aaPredicted RBP11.09□□□□□ -0.63
SCN9A-205ENST00000454569 GEMP55040 296 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 DHX9Q08211 1270 aaKnown RBP11.09□□□□□ -0.63
SCN9A-205ENST00000454569 GALNT3Q14435 633 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 MAP9Q49MG5 647 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 FNDC3BQ53EP0 1204 aaKnown RBP11.09□□□□□ -0.63
SCN9A-205ENST00000454569 C2orf27AQ580R0 203 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 BEND6Q5SZJ8 279 aaPredicted RBP11.09□□□□□ -0.63
SCN9A-205ENST00000454569 C9orf64Q5T6V5 341 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 DENND2CQ68D51 928 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 PKN3Q6P5Z2 889 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 TPRG1Q6ZUI0 275 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 PCGF5Q86SE9 256 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 ANKMY2Q8IV38 441 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 ZNF687Q8N1G0 1237 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 RYBPQ8N488 228 aaPredicted RBP11.09□□□□□ -0.63
SCN9A-205ENST00000454569 MCUQ8NE86 351 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 ISG20Q96AZ6 181 aaKnown RBP11.09□□□□□ -0.63
SCN9A-205ENST00000454569 SIGLEC10Q96LC7 697 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 FMO2Q99518 471 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 TBL1YQ9BQ87 522 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 EPB41L4BQ9H329 900 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 LRRC4CQ9HCJ2 640 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 ARFGAP3Q9NP61 516 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 EIF2B3Q9NR50 452 aaKnown RBP11.09□□□□□ -0.63
SCN9A-205ENST00000454569 PRKAG3Q9UGI9 489 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 SARDHQ9UL12 918 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 PLA2G4CQ9UP65 541 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 VPS9D1Q9Y2B5 631 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 STARD13Q9Y3M8 1113 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 RAI2Q9Y5P3 530 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 WASF2Q9Y6W5 498 aa11.09□□□□□ -0.63
SCN9A-205ENST00000454569 CXorf51AA0A1B0GTR3 108 aa11.08□□□□□ -0.64
SCN9A-205ENST00000454569 E7ESA3 106 aa11.08□□□□□ -0.64
SCN9A-205ENST00000454569 FZD6O60353 706 aa11.08□□□□□ -0.64
SCN9A-205ENST00000454569 ADAM23O75077 832 aa11.08□□□□□ -0.64
SCN9A-205ENST00000454569 SERPINF2P08697 491 aa11.08□□□□□ -0.64
SCN9A-205ENST00000454569 PIRTP0C851 137 aa11.08□□□□□ -0.64
SCN9A-205ENST00000454569 MGAT1P26572 445 aa11.08□□□□□ -0.64
SCN9A-205ENST00000454569 TNFRSF4P43489 277 aa11.08□□□□□ -0.64
SCN9A-205ENST00000454569 CSNK1DP48730 415 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms