RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 BRAT1Q6PJG6 821 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 ARHGAP36Q6ZRI8 547 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 ZNF662Q6ZS27 426 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 SRLQ86TD4 932 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 NETO2Q8NC67 525 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 TSEN2Q8NCE0 465 aaKnown RBP16.57■□□□□ 0.24
SF3A1-204ENST00000447376 PCDH19Q8TAB3 1148 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 C1orf216Q8TAB5 229 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 HCAR2Q8TDS4 363 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 PSKH2Q96QS6 385 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 FSCN3Q9NQT6 498 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 DKK3Q9UBP4 350 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 AMFRQ9UKV5 643 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 NUMA1Q14980 2115 aa16.57■□□□□ 0.24
SF3A1-204ENST00000447376 GON4LQ3T8J9 2241 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 CCDC66A2RUB6 948 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 DCDC2BA2VCK2 349 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 CDX4O14627 284 aaPredicted RBP16.56■□□□□ 0.24
SF3A1-204ENST00000447376 APOL1O14791 398 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 MFSD11O43934 449 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 MAFKO60675 156 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 ZRANB2O95218 330 aaKnown RBP eCLIP16.56■□□□□ 0.24
SF3A1-204ENST00000447376 IL4RP24394 825 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 CETN2P41208 172 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 GARSP41250 739 aaKnown RBP16.56■□□□□ 0.24
SF3A1-204ENST00000447376 MMP13P45452 471 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 TAS2R38P59533 333 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 POLR2LP62875 67 aaKnown RBP16.56■□□□□ 0.24
SF3A1-204ENST00000447376 OVGP1Q12889 678 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 SLC14A1Q13336 389 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 NCBP2-AS2Q69YL0 99 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 BZW1Q7L1Q6 419 aaKnown RBP16.56■□□□□ 0.24
SF3A1-204ENST00000447376 PEX26Q7Z412 305 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 RFX6Q8HWS3 928 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 KATNAL2Q8IYT4 538 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 RCOR2Q8IZ40 523 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 CCNYQ8ND76 341 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 CXorf40AQ8TE69 158 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 RAPGEF5Q92565 580 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 FAF2Q96CS3 445 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 SLC6A18Q96N87 628 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 RNF157Q96PX1 679 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 C1QTNF7Q9BXJ2 289 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 GOLPH3Q9H4A6 298 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 SUV39H2Q9H5I1 410 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 GAREM1Q9H706 876 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 TRIM10Q9UDY6 481 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 GUCA1BQ9UMX6 200 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 ANKRD6Q9Y2G4 727 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 FADS3Q9Y5Q0 445 aa16.56■□□□□ 0.24
SF3A1-204ENST00000447376 PI4KAP42356 2102 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 A0A1W2PQ67 120 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 GRID2IPA4D2P6 1211 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 VILLO15195 856 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 SLC31A1O15431 190 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 PIGNO95427 931 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 HNRNPA2B1P22626 353 aaKnown RBP16.55■□□□□ 0.24
SF3A1-204ENST00000447376 CCNCP24863 283 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 SLC10A7Q0GE19 358 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 GALNT2Q10471 571 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 TFDP2Q14188 446 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 SUZ12Q15022 739 aaKnown RBP16.55■□□□□ 0.24
SF3A1-204ENST00000447376 RALGPS1Q5JS13 557 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 IQCHQ86VS3 1027 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 CCDC50Q8IVM0 306 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 UBL4BQ8N7F7 174 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 LRRC57Q8N9N7 239 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 MFSD2AQ8NA29 543 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 FAM174AQ8TBP5 190 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 RNF25Q96BH1 459 aaPredicted RBP16.55■□□□□ 0.24
SF3A1-204ENST00000447376 RBM41Q96IZ5 413 aaKnown RBP16.55■□□□□ 0.24
SF3A1-204ENST00000447376 ALS2CR12Q96Q35 445 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 SCUBE2Q9NQ36 999 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 GDF3Q9NR23 364 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 DNAAF2Q9NVR5 837 aaKnown RBP16.55■□□□□ 0.24
SF3A1-204ENST00000447376 PPP2R2CQ9Y2T4 447 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 HEY1Q9Y5J3 304 aa16.55■□□□□ 0.24
SF3A1-204ENST00000447376 MIF4GDA9UHW6 222 aaKnown RBP16.54■□□□□ 0.24
SF3A1-204ENST00000447376 PPP1R12AO14974 1030 aaPredicted RBP16.54■□□□□ 0.24
SF3A1-204ENST00000447376 ZSCAN12O43309 604 aa16.54■□□□□ 0.24
SF3A1-204ENST00000447376 KRT10P13645 584 aa16.54■□□□□ 0.24
SF3A1-204ENST00000447376 CTNNA1P35221 906 aaKnown RBP16.54■□□□□ 0.24
SF3A1-204ENST00000447376 ARRB1P49407 418 aaPredicted RBP16.54■□□□□ 0.24
SF3A1-204ENST00000447376 FOXK2Q01167 660 aa16.54■□□□□ 0.24
SF3A1-204ENST00000447376 ITKQ08881 620 aa16.54■□□□□ 0.24
SF3A1-204ENST00000447376 HNRNPDQ14103 355 aaKnown RBP16.54■□□□□ 0.24
SF3A1-204ENST00000447376 HLA-BQ31612 363 aa16.54■□□□□ 0.24
SF3A1-204ENST00000447376 TP53INP2Q8IXH6 220 aa16.54■□□□□ 0.24
SF3A1-204ENST00000447376 OXR1Q8N573 874 aa16.54■□□□□ 0.24
SF3A1-204ENST00000447376 EXD1Q8NHP7 514 aa16.54■□□□□ 0.24
SF3A1-204ENST00000447376 SLC17A9Q9BYT1 436 aa16.54■□□□□ 0.24
SF3A1-204ENST00000447376 POLR1EQ9GZS1 481 aaKnown RBP16.54■□□□□ 0.24
SF3A1-204ENST00000447376 LZTFL1Q9NQ48 299 aa16.54■□□□□ 0.24
SF3A1-204ENST00000447376 AMACRQ9UHK6 382 aa16.54■□□□□ 0.24
SF3A1-204ENST00000447376 TTLL3Q9Y4R7 772 aa16.54■□□□□ 0.24
SF3A1-204ENST00000447376 PCDHA3Q9Y5H8 950 aa16.54■□□□□ 0.24
SF3A1-204ENST00000447376 A0A0U1RQJ8 604 aa16.53■□□□□ 0.24
SF3A1-204ENST00000447376 UPK3BL1B0FP48 263 aa16.53■□□□□ 0.24
SF3A1-204ENST00000447376 UPK3BL2E5RIL1 263 aa16.53■□□□□ 0.24
SF3A1-204ENST00000447376 MATN3O15232 486 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms