RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 ATP13A3Q9H7F0 1226 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 CAPN10Q9HC96 672 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 SCUBE2Q9NQ36 999 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 AASDHPPTQ9NRN7 309 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 GGT7Q9UJ14 662 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 AMFRQ9UKV5 643 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 GUCA1BQ9UMX6 200 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 ITM2BQ9Y287 266 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 PCDHA3Q9Y5H8 950 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 FADS3Q9Y5Q0 445 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 TP53BP1Q12888 1972 aaPredicted RBP18.86■□□□□ 0.61
SHH-204ENST00000441114 MATN3O15232 486 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 SLC31A1O15431 190 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 FTCDO95954 541 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 TIMP2P16035 220 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 SERPINA4P29622 427 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 ATXN3P54252 364 aaPredicted RBP18.86■□□□□ 0.61
SHH-204ENST00000441114 CCZ1BP86790 482 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 CCZ1P86791 482 aaPredicted RBP18.86■□□□□ 0.61
SHH-204ENST00000441114 BCL2L1Q07817 233 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 AP1B1Q10567 949 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 TFDP2Q14188 446 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 GRM3Q14832 879 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 TFDP3Q5H9I0 405 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 NT5DC3Q86UY8 548 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 TRIM69Q86WT6 500 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 CCDC13Q8IYE1 715 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 SYCE1Q8N0S2 351 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 OR2I1PQ8NGU4 316 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 EXD1Q8NHP7 514 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 C1orf216Q8TAB5 229 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 SERAC1Q96JX3 654 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 TSGA13Q96PP4 275 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 TUBGCP5Q96RT8 1024 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 LGMNQ99538 433 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 MYOCQ99972 504 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 HEMGNQ9BXL5 484 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 RBM22Q9NW64 420 aaKnown RBP eCLIP18.86■□□□□ 0.61
SHH-204ENST00000441114 SAE1Q9UBE0 346 aaPredicted RBP18.86■□□□□ 0.61
SHH-204ENST00000441114 CDV3Q9UKY7 258 aaKnown RBP18.86■□□□□ 0.61
SHH-204ENST00000441114 PACSIN2Q9UNF0 486 aaPredicted RBP18.86■□□□□ 0.61
SHH-204ENST00000441114 TTLL3Q9Y4R7 772 aa18.86■□□□□ 0.61
SHH-204ENST00000441114 TRPM6Q9BX84 2022 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 PCDH15Q96QU1 1955 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 hCG_1818297A0A087WSY0 165 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 A0A1B0GVT2 93 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 CCDC66A2RUB6 948 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 C4orf47A7E2U8 309 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 WNT9AO14904 365 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 KRT86O43790 486 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 SYPP08247 313 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 PRLRP16471 622 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 CTNNA2P26232 953 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 HSPA9P38646 679 aaKnown RBP18.85■□□□□ 0.61
SHH-204ENST00000441114 AFF3P51826 1226 aaKnown RBP18.85■□□□□ 0.61
SHH-204ENST00000441114 ADCY2Q08462 1091 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 HNRNPDQ14103 355 aaKnown RBP18.85■□□□□ 0.61
SHH-204ENST00000441114 TEAD4Q15561 434 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 TAZQ16635 292 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 UAP1L1Q3KQV9 507 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 FAM182AQ5T1J6 154 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 STPG1Q5TH74 334 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 SEL1L3Q68CR1 1132 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 NEK5Q6P3R8 708 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 HORMAD1Q86X24 394 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 ANP32BQ92688 251 aaKnown RBP18.85■□□□□ 0.61
SHH-204ENST00000441114 RAB7BQ96AH8 199 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 HAUS1Q96CS2 278 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 HDAC11Q96DB2 347 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 FEM1CQ96JP0 617 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 NSMCE3Q96MG7 304 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 ZNF641Q96N77 438 aaPredicted RBP18.85■□□□□ 0.61
SHH-204ENST00000441114 NUDCD1Q96RS6 583 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 MGME1Q9BQP7 344 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 TSGA10Q9BZW7 698 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 SEPT10Q9P0V9 454 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 DKK3Q9UBP4 350 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 ZFR2Q9UPR6 939 aaKnown RBP18.85■□□□□ 0.61
SHH-204ENST00000441114 CAPN6Q9Y6Q1 641 aa18.85■□□□□ 0.61
SHH-204ENST00000441114 TMEM131Q92545 1883 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 KCNK1O00180 336 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 ARHGAP33O14559 1287 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 LATO43561 262 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 JCHAINP01591 159 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 PRKCGP05129 697 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 CCDC175P0C221 793 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 CCNB1P14635 433 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 PECAM1P16284 738 aaPredicted RBP18.84■□□□□ 0.61
SHH-204ENST00000441114 RWDD2BP57060 319 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 AP1S1P61966 158 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 SEMG2Q02383 582 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 GRIK2Q13002 908 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 PDK1Q15118 436 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 SETMARQ53H47 684 aaPredicted RBP18.84■□□□□ 0.61
SHH-204ENST00000441114 AADACL2Q6P093 401 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 TEX26Q8N6G2 289 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 NETO1Q8TDF5 533 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 PDCD6IPQ8WUM4 868 aaKnown RBP18.84■□□□□ 0.61
SHH-204ENST00000441114 MAML1Q92585 1016 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 RMDN1Q96DB5 314 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms