RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-206	ENST00000441089	NDST1	P52848	882 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	RAD23B	P54727	409 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	TNNC1	P63316	161 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	GPR17	Q13304	367 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	SV2C	Q496J9	727 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	TDRD12	Q587J7	1177 aa	Known RBP	4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	SNAP47	Q5SQN1	464 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	TAF3	Q5VWG9	929 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	WSCD1	Q658N2	575 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	ZSCAN30	Q86W11	494 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	REXO1L1P	Q8IX06	675 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	CCDC170	Q8IYT3	715 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	CCAR2	Q8N163	923 aa	Known RBP	4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	PDCL2	Q8N4E4	241 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	MAB21L3	Q8N8X9	362 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	SLC4A11	Q8NBS3	891 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	SYT8	Q8NBV8	401 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	CADM4	Q8NFZ8	388 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	RNF141	Q8WVD5	230 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	MRPS31	Q92665	395 aa	Known RBP	4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	IGSF8	Q969P0	613 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	MOCOS	Q96EN8	888 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	SENP8	Q96LD8	212 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	FAM81B	Q96LP2	452 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	CCDC42	Q96M95	316 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	PNKP	Q96T60	521 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	MMS19	Q96T76	1030 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	EIF3C	Q99613	913 aa	Known RBP	4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	AGPAT1	Q99943	283 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	PACSIN1	Q9BY11	444 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	IMPG2	Q9BZV3	1241 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	TMPRSS5	Q9H3S3	457 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	ZNF768	Q9H5H4	540 aa	Known RBP	4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	ZNF552	Q9H707	407 aa	Predicted RBP	4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	CYP3A43	Q9HB55	503 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	THSD1	Q9NS62	852 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	ZNHIT6	Q9NWK9	470 aa	Known RBP	4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	TRMT1	Q9NXH9	659 aa	Known RBP	4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	REV1	Q9UBZ9	1251 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	TRIM10	Q9UDY6	481 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	ADAMTS1	Q9UHI8	967 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	CLCA2	Q9UQC9	943 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	TIMM13	Q9Y5L4	95 aa	Predicted RBP	4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	EPN1	Q9Y6I3	576 aa	Predicted RBP	4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	STAB1	Q9NY15	2570 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089		A0A1B0GTL3	188 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	OR6C75	A6NL08	312 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	NOTO	A8MTQ0	251 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089		M0QZQ0	153 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089		O00370	1275 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	GABRD	O14764	452 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	PAPSS1	O43252	624 aa	Predicted RBP	4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	AKR1B10	O60218	316 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	ATP2C2	O75185	946 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	TACC1	O75410	805 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	CLSTN1	O94985	981 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	KAT7	O95251	611 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	LDOC1	O95751	146 aa	Predicted RBP	4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	CYP1A1	P04798	512 aa	Predicted RBP	4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	PAEP	P09466	180 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	PDGFRB	P09619	1106 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	UNG	P13051	313 aa	Predicted RBP	4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	P4HA1	P13674	534 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	HOXB2	P14652	356 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	ITGB6	P18564	788 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	TNFAIP3	P21580	790 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	WARS	P23381	471 aa	Known RBP	4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	ACAT1	P24752	427 aa	Known RBP	4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	ANXA13	P27216	316 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	TPP2	P29144	1249 aa	Predicted RBP	4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	CYLC1	P35663	651 aa	Predicted RBP	4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	GRIA2	P42262	883 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	KIR2DL1	P43626	348 aa	Predicted RBP	4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	PDE6C	P51160	858 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	CDR2	Q01850	454 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	YWHAH	Q04917	246 aa	Predicted RBP	4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	SLC18A3	Q16572	532 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	ARL13B	Q3SXY8	428 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	HIST2H2BC	Q6DN03	193 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	SDE2	Q6IQ49	451 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	DENND1B	Q6P3S1	775 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	DSTYK	Q6XUX3	929 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	REC114	Q7Z4M0	266 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	ACOT1	Q86TX2	421 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	MON1A	Q86VX9	555 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	PASD1	Q8IV76	773 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	ADGRF2	Q8IZF7	708 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	WDTC1	Q8N5D0	677 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	DCBLD1	Q8N8Z6	715 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	C12orf29	Q8N999	325 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	OR6B3	Q8NGW1	331 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	OR10T2	Q8NGX3	314 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	ZNF606	Q8WXB4	792 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	RFFL	Q8WZ73	363 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	DACT3	Q96B18	629 aa	Predicted RBP	4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	PPP1R13B	Q96KQ4	1090 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	CRTAC1	Q9NQ79	661 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	RRAGD	Q9NQL2	400 aa	Predicted RBP	4.95	□□□□□ -1.62

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