RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 C6orf10Q5SRN2 563 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 SERTAD4-AS1Q5TG53 156 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 FAM205BPQ63HN1 556 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 HIST2H2BCQ6DN03 193 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 HIST2H2BDQ6DRA6 164 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 ISM2Q6H9L7 571 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 C4orf50Q6ZRC1 276 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 FAM83HQ6ZRV2 1179 aaPredicted RBP3.7□□□□□ -1.82
VPS41-207ENST00000439468 TRAPPC11Q7Z392 1133 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 KDELC2Q7Z4H8 507 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 NOXA1Q86UR1 476 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 IGFN1Q86VF2 1251 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 TDRPQ86YL5 185 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 DHX40Q8IX18 779 aaKnown RBP3.7□□□□□ -1.82
VPS41-207ENST00000439468 KIAA2013Q8IYS2 634 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 DPP10Q8N608 796 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 HORMAD2Q8N7B1 307 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 KDM1BQ8NB78 822 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 CADM4Q8NFZ8 388 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 CEP76Q8TAP6 659 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 ADAMTS15Q8TE58 950 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 TMEM174Q8WUU8 243 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 PABPC5Q96DU9 382 aaKnown RBP3.7□□□□□ -1.82
VPS41-207ENST00000439468 POLDIP3Q9BY77 421 aaKnown RBP3.7□□□□□ -1.82
VPS41-207ENST00000439468 RANBP17Q9H2T7 1088 aaKnown RBP3.7□□□□□ -1.82
VPS41-207ENST00000439468 PNRC2Q9NPJ4 139 aaKnown RBP3.7□□□□□ -1.82
VPS41-207ENST00000439468 ZNF335Q9H4Z2 1342 aaPredicted RBP3.7□□□□□ -1.82
VPS41-207ENST00000439468 FSD2A1L4K1 749 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 A6NCN8 305 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 LIASO43766 372 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 ATG13O75143 517 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 PTP4A3O75365 173 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 DDX58O95786 925 aaKnown RBP3.69□□□□□ -1.82
VPS41-207ENST00000439468 CLEC3BP05452 202 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 LCKP06239 509 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 RARGP13631 454 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 RFC1P35251 1148 aaPredicted RBP3.69□□□□□ -1.82
VPS41-207ENST00000439468 PPP3CCP48454 512 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 CEBPZQ03701 1054 aaKnown RBP3.69□□□□□ -1.82
VPS41-207ENST00000439468 FOXD4Q12950 439 aaPredicted RBP3.69□□□□□ -1.82
VPS41-207ENST00000439468 PTGR1Q14914 329 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 VEPH1Q14D04 833 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 ITPRIPL1Q6GPH6 555 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 KIAA1161Q6NSJ0 714 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 MZT2BQ6NZ67 158 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 CFAP161Q6P656 301 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 C9orf47Q6ZRZ4 202 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 NEK10Q6ZWH5 1172 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 RRM2BQ7LG56 351 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 SLC46A3Q7Z3Q1 461 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 SERPINA11Q86U17 422 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 NGEFQ8N5V2 710 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 ASB5Q8WWX0 329 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 SAAL1Q96ER3 474 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 THOC3Q96J01 351 aaKnown RBP3.69□□□□□ -1.82
VPS41-207ENST00000439468 CLMNQ96JQ2 1002 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 YME1L1Q96TA2 773 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 SDF4Q9BRK5 362 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 WDR83Q9BRX9 315 aaKnown RBP3.69□□□□□ -1.82
VPS41-207ENST00000439468 B3GNT4Q9C0J1 378 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 MVB12BQ9H7P6 319 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 MAP6D1Q9H9H5 199 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 SCPEP1Q9HB40 452 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 TBC1D22BQ9NU19 505 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 SEPT11Q9NVA2 429 aaKnown RBP3.69□□□□□ -1.82
VPS41-207ENST00000439468 MPP6Q9NZW5 540 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 ZNF580Q9UK33 172 aa3.69□□□□□ -1.82
VPS41-207ENST00000439468 INTS6Q9UL03 887 aaKnown RBP3.69□□□□□ -1.82
VPS41-207ENST00000439468 CORO1CQ9ULV4 474 aaPredicted RBP3.69□□□□□ -1.82
VPS41-207ENST00000439468 TDRD9Q8NDG6 1382 aaKnown RBP3.68□□□□□ -1.82
VPS41-207ENST00000439468 FAM237BA0A1B0GVD1 139 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 FAM90A8PA6NJQ4 464 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 NPIPB11E5RHQ5 1161 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 STMND1H3BQB6 276 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 TLX3O43711 291 aaPredicted RBP3.68□□□□□ -1.82
VPS41-207ENST00000439468 ATP2C2O75185 946 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 CLDN7O95471 211 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 HEXAP06865 529 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 LDHCP07864 332 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 FAM90A13PP0C7W8 464 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 FAM90A24PP0C7X0 464 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 HSPA1AP0DMV8 641 aaKnown RBP3.68□□□□□ -1.82
VPS41-207ENST00000439468 HSPA1BP0DMV9 641 aaKnown RBP3.68□□□□□ -1.82
VPS41-207ENST00000439468 CBSLP0DN79 551 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 CTPS1P17812 591 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 TNFRSF1BP20333 461 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 CHMP24386 653 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 NFKBIAP25963 317 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 YWHAQP27348 245 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 POU1F1P28069 291 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 CCKARP32238 428 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 TTKP33981 857 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 CBSP35520 551 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 CPOXP36551 454 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 GNAQP50148 359 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 BLKP51451 505 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 RUNX2Q13950 521 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 PPP2R5BQ15173 497 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 RNPS1Q15287 305 aaKnown RBP3.68□□□□□ -1.82
VPS41-207ENST00000439468 ALG11Q2TAA5 492 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms