RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 PSME4Q14997 1843 aa4.34□□□□□ -1.71
HMGB3-203ENST00000430118 KIAA0100Q14667 2235 aaKnown RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 ZNF804BA4D1E1 1349 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 CCL15-CCL14A0A0B4J2E2 113 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 FAM170AA1A519 330 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 CCDC151A5D8V7 595 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 TMEM247A6NEH6 219 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 LIPT2A6NK58 231 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 TTC36A6NLP5 189 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 GCOM1H8Y6P7 765 aaPredicted RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 VILLO15195 856 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 BCAT2O15382 392 aaPredicted RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 YY2O15391 372 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 HBP1O60381 514 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 CSPG5O95196 566 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 ERBB2P04626 1255 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 ITGB3P05106 788 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 RHOP08100 348 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 NPSP0C0P6 89 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 CETPP11597 493 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 CCL5P13501 91 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 HOXB9P17482 250 aaPredicted RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 PRPH2P23942 346 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 RGS2P41220 211 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 HARS2P49590 506 aaKnown RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 DIO1P49895 249 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 NLRP5P59047 1200 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 UFM1P61960 85 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 RPS8P62241 208 aaKnown RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 PRAMEP78395 509 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 RAE1P78406 368 aaKnown RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 PUM1Q14671 1186 aaKnown RBP eCLIP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 CRYMQ14894 314 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 CCL15Q16663 113 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 CCDC152Q4G0S7 254 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 STRIP1Q5VSL9 837 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 FAM109BQ6ICB4 259 aaPredicted RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 SLC30A6Q6NXT4 461 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 TMEM154Q6P9G4 183 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 Q7L0L9 218 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 MCM10Q7L590 875 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 LIMS2Q7Z4I7 341 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 GPR149Q86SP6 731 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 MON1AQ86VX9 555 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 LRRC56Q8IYG6 542 aaPredicted RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 TOR1AIP2Q8NFQ8 470 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 CLEC4CQ8WTT0 213 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 SLC25A43Q8WUT9 341 aaPredicted RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 CNOT9Q92600 299 aaKnown RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 AKAP1Q92667 903 aaKnown RBP eCLIP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 CELF1Q92879 486 aaKnown RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 ARHGEF2Q92974 986 aaKnown RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 LENG9Q96B70 501 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 KLHL29Q96CT2 875 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 ZNF845Q96IR2 970 aaPredicted RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 ADOQ96SZ5 270 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 BAG1Q99933 345 aaPredicted RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 SLF1Q9BQI6 1058 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 THAP7Q9BT49 309 aaPredicted RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 TXLNGYQ9BZA5 131 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 KLC2Q9H0B6 622 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 EPHX3Q9H6B9 360 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 ARHGEF3Q9NR81 526 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 DUSP22Q9NRW4 184 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 SERTAD4Q9NUC0 356 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 SEPT11Q9NVA2 429 aaKnown RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 NFKBIL1Q9UBC1 381 aaPredicted RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 ADD3Q9UEY8 706 aaKnown RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 LIMA1Q9UHB6 759 aaKnown RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 TESMINQ9Y4I5 508 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 PCDHB2Q9Y5E7 798 aa4.33□□□□□ -1.72
HMGB3-203ENST00000430118 SIRT4Q9Y6E7 314 aaPredicted RBP4.33□□□□□ -1.72
HMGB3-203ENST00000430118 COL3A1P02461 1466 aaPredicted RBP4.32□□□□□ -1.72
HMGB3-203ENST00000430118 C17orf113A0A1B0GUU1 675 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 hCG_1807616A0A1W2PRN6 198 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 TAF4O00268 1085 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 P4HA2O15460 535 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 PEX1O43933 1283 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 HLA-DQA2P01906 255 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 URODP06132 367 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 EGR2P11161 476 aaPredicted RBP4.32□□□□□ -1.72
HMGB3-203ENST00000430118 PKMP14618 531 aaKnown RBP4.32□□□□□ -1.72
HMGB3-203ENST00000430118 ZNF8P17098 575 aaPredicted RBP4.32□□□□□ -1.72
HMGB3-203ENST00000430118 SFPQP23246 707 aaKnown RBP eCLIP4.32□□□□□ -1.72
HMGB3-203ENST00000430118 PCSK6P29122 969 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 MAPK4P31152 587 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 CXCR5P32302 372 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 PTGS2P35354 604 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 CPOXP36551 454 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 BLKP51451 505 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 PDE1AP54750 535 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 ADPRHP54922 357 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 LMAN2Q12907 356 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 DCTN2Q13561 401 aaKnown RBP4.32□□□□□ -1.72
HMGB3-203ENST00000430118 BYSLQ13895 437 aaKnown RBP4.32□□□□□ -1.72
HMGB3-203ENST00000430118 BECN1Q14457 450 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 CC2D1BQ5T0F9 858 aaKnown RBP4.32□□□□□ -1.72
HMGB3-203ENST00000430118 KIAA1324Q6UXG2 1013 aaKnown RBP4.32□□□□□ -1.72
HMGB3-203ENST00000430118 DPY19L3Q6ZPD9 716 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 IKBIPQ70UQ0 350 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms