RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 SEMA6AQ9H2E6 1030 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 FBRSL1Q9HCM7 1045 aaKnown RBP9.97□□□□□ -0.81
SS18-203ENST00000415083 POLR3BQ9NW08 1133 aaPredicted RBP9.97□□□□□ -0.81
SS18-203ENST00000415083 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.97□□□□□ -0.81
SS18-203ENST00000415083 TRHDEQ9UKU6 1024 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 ANKRD6Q9Y2G4 727 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 PTGDR2Q9Y5Y4 395 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 RAD54BQ9Y620 910 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 COMMD3-BMI1R4GMX3 469 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 hCG_2014768A0A024R1R8 64 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 ERI2A8K979 691 aaKnown RBP9.96□□□□□ -0.81
SS18-203ENST00000415083 C8BP07358 591 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 ALDOCP09972 364 aaKnown RBP9.96□□□□□ -0.81
SS18-203ENST00000415083 DESP17661 470 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 YWHAQP27348 245 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 PNPLA4P41247 253 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 CCNA1P78396 465 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 PITRM1Q5JRX3 1037 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 INTS6LQ5JSJ4 861 aaKnown RBP9.96□□□□□ -0.81
SS18-203ENST00000415083 AFMIDQ63HM1 303 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 IYDQ6PHW0 289 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 RANBP10Q6VN20 620 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 TRIM67Q6ZTA4 783 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 FASTKD5Q7L8L6 764 aaKnown RBP9.96□□□□□ -0.81
SS18-203ENST00000415083 RETREG3Q86VR2 466 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 NUP93Q8N1F7 819 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 EZH1Q92800 747 aaPredicted RBP9.96□□□□□ -0.81
SS18-203ENST00000415083 TMA16Q96EY4 203 aaKnown RBP9.96□□□□□ -0.81
SS18-203ENST00000415083 PTPN18Q99952 460 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 TBL1YQ9BQ87 522 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 CENPKQ9BS16 269 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 TINF2Q9BSI4 451 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 FICDQ9BVA6 458 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 POMKQ9H5K3 350 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 CNGB3Q9NQW8 809 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 DUS2Q9NX74 493 aaKnown RBP9.96□□□□□ -0.81
SS18-203ENST00000415083 GIMAP2Q9UG22 337 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 SFMBT1Q9UHJ3 866 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 RAB26Q9ULW5 256 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 CDYLQ9Y232 598 aa9.96□□□□□ -0.81
SS18-203ENST00000415083 TDRD15B5MCY1 1934 aaKnown RBP9.96□□□□□ -0.82
SS18-203ENST00000415083 MAGEB16A2A368 324 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 A8MT66 165 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 MSI1O43347 362 aaKnown RBP9.96□□□□□ -0.82
SS18-203ENST00000415083 H2AFYO75367 372 aaKnown RBP9.96□□□□□ -0.82
SS18-203ENST00000415083 MMP2P08253 660 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 SRGAP2BP0DMP2 458 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 TSPAN8P19075 237 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 HOXC8P31273 242 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 AIF1P55008 147 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 BEX3Q00994 111 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 UGT3A2Q3SY77 523 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 C16orf89Q6UX73 402 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 FAM43BQ6ZT52 329 aaPredicted RBP9.96□□□□□ -0.82
SS18-203ENST00000415083 AMIGO2Q86SJ2 522 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 LDB1Q86U70 411 aaPredicted RBP9.96□□□□□ -0.82
SS18-203ENST00000415083 OR13J1Q8NGT2 312 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 DQX1Q8TE96 717 aaKnown RBP9.96□□□□□ -0.82
SS18-203ENST00000415083 BRI3BPQ8WY22 251 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 TRPV6Q9H1D0 765 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 GSTO2Q9H4Y5 243 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 WDCPQ9H6R7 721 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 COQ10BQ9H8M1 238 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 CYP4F12Q9HCS2 524 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 OSER1Q9NX31 292 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 ARHGEF38Q9NXL2 777 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 CACNA2D2Q9NY47 1150 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 TCAF1Q9Y4C2 921 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 CEPT1Q9Y6K0 416 aa9.96□□□□□ -0.82
SS18-203ENST00000415083 SLC22A2O15244 555 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 CSPG5O95196 566 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 ASLP04424 464 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 FGFR3P22607 806 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 ME2P23368 584 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 HOXC13P31276 330 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 PLK1P53350 603 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 CDKN2DP55273 166 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 PFKPQ01813 784 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 TIGD5Q53EQ6 642 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 PCID2Q5JVF3 399 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 KDELC1Q6UW63 502 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 CCNYL1Q8N7R7 359 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 IPMKQ8NFU5 416 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 RIN3Q8TB24 985 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 MPP4Q96JB8 637 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 SCYL1Q96KG9 808 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 FCRL5Q96RD9 977 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 TSPYL2Q9H2G4 693 aaPredicted RBP9.95□□□□□ -0.82
SS18-203ENST00000415083 MEAF6Q9HAF1 191 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 GLOD4Q9HC38 313 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 ATP13A1Q9HD20 1204 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 LRRC14BA6NHZ5 514 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 H3BSA7 217 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 DFFAO00273 331 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 ATP6V1B1P15313 513 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 MFSD10Q14728 455 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 R3HDM1Q15032 1099 aaKnown RBP9.95□□□□□ -0.82
SS18-203ENST00000415083 NRF1Q16656 503 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 MAP3K21Q5TCX8 1036 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 NXNQ6DKJ4 435 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms