RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ZNF77Q15935 545 aa14.48□□□□□ -0.09
HMGA1-203ENST00000374116 PRPF39Q86UA1 669 aaKnown RBP14.48□□□□□ -0.09
HMGA1-203ENST00000374116 DENND1CQ8IV53 801 aa14.48□□□□□ -0.09
HMGA1-203ENST00000374116 GJD3Q8N144 294 aa14.48□□□□□ -0.09
HMGA1-203ENST00000374116 BPIFB1Q8TDL5 484 aa14.48□□□□□ -0.09
HMGA1-203ENST00000374116 LRRN4Q8WUT4 740 aa14.48□□□□□ -0.09
HMGA1-203ENST00000374116 SPOCK2Q92563 424 aa14.48□□□□□ -0.09
HMGA1-203ENST00000374116 SIGLEC10Q96LC7 697 aa14.48□□□□□ -0.09
HMGA1-203ENST00000374116 SPATA13Q96N96 652 aa14.48□□□□□ -0.09
HMGA1-203ENST00000374116 EBNA1BP2Q99848 306 aaKnown RBP14.48□□□□□ -0.09
HMGA1-203ENST00000374116 OLA1Q9NTK5 396 aaKnown RBP14.48□□□□□ -0.09
HMGA1-203ENST00000374116 GGT7Q9UJ14 662 aa14.48□□□□□ -0.09
HMGA1-203ENST00000374116 COL4A3Q01955 1670 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 MAGEA13PA6NCF6 341 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 C19orf67A6NJJ6 358 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 GOLGA8RI6L899 631 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 DCLK1O15075 740 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 ZSCAN9O15535 394 aaPredicted RBP14.47□□□□□ -0.09
HMGA1-203ENST00000374116 PDHA1P08559 390 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 SNRPAP09012 282 aaKnown RBP14.47□□□□□ -0.09
HMGA1-203ENST00000374116 MLNP12872 115 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 GDI1P31150 447 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 NEK3P51956 506 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 SETDB1Q15047 1291 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 PDK1Q15118 436 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 PRKD1Q15139 912 aaPredicted RBP14.47□□□□□ -0.09
HMGA1-203ENST00000374116 ZRSR2Q15696 482 aaKnown RBP14.47□□□□□ -0.09
HMGA1-203ENST00000374116 IER5LQ5T953 404 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 FOXB2Q5VYV0 432 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 MSANTD2Q6P1R3 559 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 KLHDC10Q6PID8 442 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 SH2D5Q6ZV89 423 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 CYS1Q717R9 158 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 MTSS1LQ765P7 747 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 ZNF534Q76KX8 674 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 RNF135Q8IUD6 432 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 BBS7Q8IWZ6 715 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 CTAGE3PQ8IX95 158 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 PPM1NQ8N819 430 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 BHMTQ93088 406 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 ELSPBP1Q96BH3 223 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 SERAC1Q96JX3 654 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 COL25A1Q9BXS0 654 aaPredicted RBP14.47□□□□□ -0.09
HMGA1-203ENST00000374116 VCX3BQ9H321 246 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 TRPV4Q9HBA0 871 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 VCX3AQ9NNX9 186 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 SLCO1B3Q9NPD5 702 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 ATXN10Q9UBB4 475 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 MUTYHQ9UIF7 546 aa14.47□□□□□ -0.09
HMGA1-203ENST00000374116 KIF26AQ9ULI4 1882 aaPredicted RBP14.47□□□□□ -0.09
HMGA1-203ENST00000374116 OTOL1A6NHN0 477 aaPredicted RBP14.46□□□□□ -0.09
HMGA1-203ENST00000374116 GREM1O60565 184 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 OPHN1O60890 802 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 DHRS4L1P0CG22 281 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 VAV1P15498 845 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 PSMC3P17980 439 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 CORO1AP31146 461 aaKnown RBP14.46□□□□□ -0.09
HMGA1-203ENST00000374116 CXCR3P49682 368 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 TBX4P57082 545 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 USP4Q13107 963 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 MUM1Q2TAK8 710 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 FAM182AQ5T1J6 154 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 FYB2Q5VWT5 728 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 UNC5AQ6ZN44 842 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 RFX8Q6ZV50 586 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 LCA5Q86VQ0 697 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 CHSY1Q86X52 802 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 MFSD6LQ8IWD5 586 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 ZNF276Q8N554 614 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 GSDMBQ8TAX9 411 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 MIPOL1Q8TD10 442 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 ZNF398Q8TD17 642 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 LZICQ8WZA0 190 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 RNF34Q969K3 372 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 MTBPQ96DY7 904 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 CDK5RAP1Q96SZ6 601 aaKnown RBP14.46□□□□□ -0.09
HMGA1-203ENST00000374116 UHRF1Q96T88 793 aaPredicted RBP14.46□□□□□ -0.09
HMGA1-203ENST00000374116 KLF6Q99612 283 aaPredicted RBP14.46□□□□□ -0.09
HMGA1-203ENST00000374116 EBF3Q9H4W6 596 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 PLAC1Q9HBJ0 212 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 EIF2B3Q9NR50 452 aaKnown RBP14.46□□□□□ -0.09
HMGA1-203ENST00000374116 NMRK1Q9NWW6 199 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 GTSE1Q9NYZ3 720 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 SLC17A7Q9P2U7 560 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 LNPEPQ9UIQ6 1025 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 GMEB1Q9Y692 573 aa14.46□□□□□ -0.09
HMGA1-203ENST00000374116 FAM72CH0Y354 149 aa14.45□□□□□ -0.1
HMGA1-203ENST00000374116 IRAK2O43187 625 aa14.45□□□□□ -0.1
HMGA1-203ENST00000374116 MFSD11O43934 449 aa14.45□□□□□ -0.1
HMGA1-203ENST00000374116 ECI2O75521 394 aa14.45□□□□□ -0.1
HMGA1-203ENST00000374116 DCTN3O75935 186 aa14.45□□□□□ -0.1
HMGA1-203ENST00000374116 F9P00740 461 aa14.45□□□□□ -0.1
HMGA1-203ENST00000374116 IGLV3-25P01717 112 aa14.45□□□□□ -0.1
HMGA1-203ENST00000374116 ARSAP15289 507 aa14.45□□□□□ -0.1
HMGA1-203ENST00000374116 RANBP1P43487 201 aa14.45□□□□□ -0.1
HMGA1-203ENST00000374116 COG7P83436 770 aa14.45□□□□□ -0.1
HMGA1-203ENST00000374116 FAM72AQ5TYM5 149 aa14.45□□□□□ -0.1
HMGA1-203ENST00000374116 RNF220Q5VTB9 566 aa14.45□□□□□ -0.1
HMGA1-203ENST00000374116 FAM72DQ6L9T8 149 aa14.45□□□□□ -0.1
HMGA1-203ENST00000374116 OTOAQ7RTW8 1153 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms