RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 SMAD1Q15797 465 aaKnown RBP4.07□□□□□ -1.76
LIG4-201ENST00000356922 SRLQ86TD4 932 aa4.07□□□□□ -1.76
LIG4-201ENST00000356922 TSPAN33Q86UF1 283 aa4.07□□□□□ -1.76
LIG4-201ENST00000356922 CAND1Q86VP6 1230 aaKnown RBP4.07□□□□□ -1.76
LIG4-201ENST00000356922 IGDCC3Q8IVU1 814 aa4.07□□□□□ -1.76
LIG4-201ENST00000356922 MPP5Q8N3R9 675 aa4.07□□□□□ -1.76
LIG4-201ENST00000356922 RYBPQ8N488 228 aaPredicted RBP4.07□□□□□ -1.76
LIG4-201ENST00000356922 DEFB119Q8N690 84 aa4.07□□□□□ -1.76
LIG4-201ENST00000356922 TTC13Q8NBP0 860 aa4.07□□□□□ -1.76
LIG4-201ENST00000356922 PDCD6IPQ8WUM4 868 aaKnown RBP4.07□□□□□ -1.76
LIG4-201ENST00000356922 NAT14Q8WUY8 206 aa4.07□□□□□ -1.76
LIG4-201ENST00000356922 HMGB4Q8WW32 186 aa4.07□□□□□ -1.76
LIG4-201ENST00000356922 PIH1D2Q8WWB5 315 aa4.07□□□□□ -1.76
LIG4-201ENST00000356922 KLHL32Q96NJ5 620 aa4.07□□□□□ -1.76
LIG4-201ENST00000356922 DPH5Q9H2P9 285 aa4.07□□□□□ -1.76
LIG4-201ENST00000356922 CHRDQ9H2X0 955 aa4.07□□□□□ -1.76
LIG4-201ENST00000356922 RETREG1Q9H6L5 497 aa4.07□□□□□ -1.76
LIG4-201ENST00000356922 KLHL8Q9P2G9 620 aaPredicted RBP4.07□□□□□ -1.76
LIG4-201ENST00000356922 MMP17Q9ULZ9 603 aa4.07□□□□□ -1.76
LIG4-201ENST00000356922 PCDHB9Q9Y5E1 797 aa4.07□□□□□ -1.76
LIG4-201ENST00000356922 SPO11Q9Y5K1 396 aa4.07□□□□□ -1.76
LIG4-201ENST00000356922 DMXL2Q8TDJ6 3036 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 TCRBV21S2A2A0A5A6 115 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 HACD1B0YJ81 288 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 CCL22O00626 93 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 WNT9AO14904 365 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 TIMM44O43615 452 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 SLC34A2O95436 690 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 APRTP07741 180 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 SRPRAP08240 638 aaKnown RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 RHOXF2BP0C7M4 288 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 TIMP2P16035 220 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 GM2AP17900 193 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 LHCGRP22888 699 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 STIP1P31948 543 aaKnown RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 PAFAH1B1P43034 410 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 TNNT3P45378 269 aaPredicted RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 WNT3AP56704 352 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 CNTN1Q12860 1018 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 CDKN3Q16667 212 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 WHAMMP3Q1A5X7 153 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 ERCC6LQ2NKX8 1250 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 P3H1Q32P28 736 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 FNBP1LQ5T0N5 605 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 DUPD1Q68J44 220 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 ZDHHC24Q6UX98 284 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 RANBP10Q6VN20 620 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 PARS2Q7L3T8 475 aaKnown RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 GSTA5Q7RTV2 222 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 FAM124AQ86V42 546 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 GSPT2Q8IYD1 628 aaKnown RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 WFIKKN2Q8TEU8 576 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 FATE1Q969F0 183 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 EXOC4Q96A65 974 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 ISG20Q96AZ6 181 aaKnown RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 CCDC97Q96F63 343 aaPredicted RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 RHOXF2Q9BQY4 288 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 CINPQ9BW66 212 aaPredicted RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 RSPH9Q9H1X1 276 aaPredicted RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 ANKZF1Q9H8Y5 726 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 IL1RAPL1Q9NZN1 696 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 SEPT3Q9UH03 358 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 SLC25A13Q9UJS0 675 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 FARP1Q9Y4F1 1045 aaPredicted RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 RAI2Q9Y5P3 530 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 MYLKQ15746 1914 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 ZZEF1O43149 2961 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 OTOGLQ3ZCN5 2332 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 LOC285095A0A1B0GVY8 99 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 A0A1W2PP55 124 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 CHURC1-FNTBB4DL54 471 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 HTRA2O43464 458 aaPredicted RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 TDGF1P13385 188 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 P2RY2P41231 377 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 ABL2P42684 1182 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 CARSP49589 748 aaKnown RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 MRPS21P82921 87 aaKnown RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 SULT2A1Q06520 285 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 ZNF33AQ06730 810 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 SLC20A2Q08357 652 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 ZNF235Q14590 738 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 FASTKD3Q14CZ7 662 aaKnown RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 CCDC38Q502W7 563 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 CERCAMQ5T4B2 595 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 SYT13Q7L8C5 426 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 LRRC49Q8IUZ0 686 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 KLHDC8BQ8IXV7 354 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 UNC5BQ8IZJ1 945 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 SLC25A41Q8N5S1 370 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 NAT8LQ8N9F0 302 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 IPMKQ8NFU5 416 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 OR52K1Q8NGK4 314 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 PIP4K2CQ8TBX8 421 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 SLCO2A1Q92959 643 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 ECHDC3Q96DC8 303 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 ZNF599Q96NL3 588 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 FCRL5Q96RD9 977 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 NUDCD1Q96RS6 583 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 FERMT1Q9BQL6 677 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms