RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 RALGPS1Q5JS13 557 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 CDC73Q6P1J9 531 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 PTF1AQ7RTS3 328 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 GLT6D1Q7Z4J2 308 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 CLYBLQ8N0X4 340 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 CDYL2Q8N8U2 506 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 KLHL32Q96NJ5 620 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 PRDM16Q9HAZ2 1276 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 CYP2B6P20813 491 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 GPR15P49685 360 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 RFX4Q33E94 735 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 WDR18Q9BV38 432 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 GOT1P17174 413 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 STARD3Q14849 445 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 OR52K2Q8NGK3 314 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 SETD4Q9NVD3 440 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 RAPGEFL1Q9UHV5 662 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 AZIN1O14977 448 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 PBLDP30039 288 aaPredicted RBP19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 SLC5A3P53794 718 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 CARNMT1Q8N4J0 409 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 GPRC5AQ8NFJ5 357 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 JOSD2Q8TAC2 188 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 NKD2Q969F2 451 aaPredicted RBP19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 PRKAG2Q9UGJ0 569 aa19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 MRPS7Q9Y2R9 242 aaKnown RBP19.68■□□□□ 0.74
CCDC88B-202ENST00000356786 CLK2P49760 499 aaKnown RBP19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 PEX6Q13608 980 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 SELENOMQ8WWX9 145 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 PORCNQ9H237 461 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 ZFP14Q9HCL3 533 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 CCNB1IP1Q9NPC3 277 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 SAMHD1Q9Y3Z3 626 aaKnown RBP19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 RIC1Q4ADV7 1423 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 STX11O75558 287 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 PGAM4Q8N0Y7 254 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 CYP4X1Q8N118 509 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 CBR4Q8N4T8 237 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 ZSCAN32Q9NX65 697 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 TRAF6Q9Y4K3 522 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 SLIT3O75094 1523 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 NR4A1P22736 598 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 MMP8P22894 467 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 WDR4P57081 412 aaKnown RBP19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 BOP1Q14137 746 aaKnown RBP19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 SPPL2CQ8IUH8 684 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 SLC16A10Q8TF71 515 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 MTFMTQ96DP5 389 aaKnown RBP19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 MED8Q96G25 268 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 VPS35Q96QK1 796 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 TMEM216Q9P0N5 145 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 POMPQ9Y244 141 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 TELO2Q9Y4R8 837 aa19.67■□□□□ 0.74
CCDC88B-202ENST00000356786 FAM149AA5PLN7 773 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 HAT1O14929 419 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 COX7A2P14406 83 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 GJA8P48165 433 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 GMPSP49915 693 aaPredicted RBP19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 CDK9P50750 372 aaKnown RBP19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 TBX4P57082 545 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 LY6KQ17RY6 165 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 VSTM1Q6UX27 236 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 ZNF572Q7Z3I7 529 aaPredicted RBP19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 FAR1Q8WVX9 515 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 ACSS2Q9NR19 701 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 CATSPERZQ9NTU4 200 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 RPS6KA6Q9UK32 745 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 ERGIC3Q9Y282 383 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 U3KQV3 271 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 CASTOR2A6NHX0 329 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 H3BRB1 525 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 PAPSS1O43252 624 aaPredicted RBP19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 KLHL18O94889 574 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 EVX2Q03828 476 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 MACC1Q6ZN28 852 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 APTXQ7Z2E3 356 aaKnown RBP19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 TDRPQ86YL5 185 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 MYLPFQ96A32 169 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 CITED4Q96RK1 184 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 TUT1Q9H6E5 874 aaKnown RBP19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 ABT1Q9ULW3 272 aaKnown RBP19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 USP17L7P0C7H9 530 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 LINC00032P0C843 101 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 TGFB3P10600 412 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 CYP4B1P13584 511 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 ANKRD13AQ8IZ07 590 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 FAM163AQ96GL9 167 aaPredicted RBP19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 HOPXQ9BPY8 73 aaPredicted RBP19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 TBC1D30Q9Y2I9 924 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 TRIM17Q9Y577 477 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 PEAK1Q9H792 1746 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 SERPINA1P01009 418 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 NOS3P29474 1203 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 ZNF135P52742 658 aaPredicted RBP19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 PPIL2Q13356 520 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 INSCQ1MX18 579 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 HYIQ5T013 277 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 NETO2Q8NC67 525 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 AGBL3Q8NEM8 1001 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 OR2T34Q8NGX1 318 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms