RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 HOXC11O43248 304 aaPredicted RBP9.31□□□□□ -0.92
USP4-202ENST00000351842 OPHN1O60890 802 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 IGSF6O95976 241 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 SAT1P21673 171 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 GRIA2P42262 883 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 ZNF135P52742 658 aaPredicted RBP9.31□□□□□ -0.92
USP4-202ENST00000351842 NRG1Q02297 640 aaPredicted RBP9.31□□□□□ -0.92
USP4-202ENST00000351842 HIF1AQ16665 826 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 PTPRNQ16849 979 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 NUDT18Q6ZVK8 323 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.31□□□□□ -0.92
USP4-202ENST00000351842 ACDQ96AP0 544 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 ASB2Q96Q27 587 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 FUT8Q9BYC5 575 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 ACE2Q9BYF1 805 aaPredicted RBP9.31□□□□□ -0.92
USP4-202ENST00000351842 OSBPL6Q9BZF3 934 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 TRPV4Q9HBA0 871 aa9.31□□□□□ -0.92
USP4-202ENST00000351842 GEMIN8Q9NWZ8 242 aaKnown RBP9.31□□□□□ -0.92
USP4-202ENST00000351842 HACD1B0YJ81 288 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 ARNTLO00327 626 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 AURKAO14965 403 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 RNASEH2AO75792 299 aaKnown RBP9.3□□□□□ -0.92
USP4-202ENST00000351842 SRFP11831 508 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 SSTR1P30872 391 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 TRAF2Q12933 501 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 XRCC4Q13426 336 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 PTK6Q13882 451 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 COL19A1Q14993 1142 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 MPP7Q5T2T1 576 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 SDE2Q6IQ49 451 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 FSTL4Q6MZW2 842 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 PRPF39Q86UA1 669 aaKnown RBP9.3□□□□□ -0.92
USP4-202ENST00000351842 CTAGE3PQ8IX95 158 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 FAM217AQ8IXS0 508 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 FRMD1Q8N878 549 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 OR2AP1Q8NGE2 309 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 MKRN2Q9H000 416 aaKnown RBP9.3□□□□□ -0.92
USP4-202ENST00000351842 GBA3Q9H227 469 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 SORCS3Q9UPU3 1222 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 CFAP69A5D8W1 941 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 DNALI1O14645 258 aaPredicted RBP9.3□□□□□ -0.92
USP4-202ENST00000351842 SASH3O75995 380 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 CPP00450 1065 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 TUBBP07437 444 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 POU2F2P09086 479 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 TARSP26639 723 aaKnown RBP9.3□□□□□ -0.92
USP4-202ENST00000351842 SNRPD1P62314 119 aaKnown RBP9.3□□□□□ -0.92
USP4-202ENST00000351842 DUPD1Q68J44 220 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 LDB1Q86U70 411 aaPredicted RBP9.3□□□□□ -0.92
USP4-202ENST00000351842 HOOK3Q86VS8 718 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 FAM160A2Q8N612 972 aaPredicted RBP9.3□□□□□ -0.92
USP4-202ENST00000351842 C12orf50Q8NA57 414 aaPredicted RBP9.3□□□□□ -0.92
USP4-202ENST00000351842 OR6P1Q8NGX9 317 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 PSKH2Q96QS6 385 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 YY1AP1Q9H869 796 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 PDFQ9HBH1 243 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 CHRAC1Q9NRG0 131 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 GRHL1Q9NZI5 618 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 DRG1Q9Y295 367 aaKnown RBP9.3□□□□□ -0.92
USP4-202ENST00000351842 COQ6Q9Y2Z9 468 aa9.3□□□□□ -0.92
USP4-202ENST00000351842 FARP1Q9Y4F1 1045 aaPredicted RBP9.3□□□□□ -0.92
USP4-202ENST00000351842 A0A1W2PP55 124 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 FAM86C2PA6NEL3 165 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 WASH4PA8MWX3 477 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 K7EQS6 105 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 PCDH8O95206 1070 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 MTA1Q13330 715 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 MLF2Q15773 248 aaPredicted RBP9.29□□□□□ -0.92
USP4-202ENST00000351842 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.29□□□□□ -0.92
USP4-202ENST00000351842 TRIM67Q6ZTA4 783 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 PPIL6Q8IXY8 311 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 PDIK1LQ8N165 341 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 OR2A12Q8NGT7 310 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 UHRF1Q96T88 793 aaPredicted RBP9.29□□□□□ -0.92
USP4-202ENST00000351842 DYRK4Q9NR20 520 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 PSD3Q9NYI0 1048 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 SAMD15Q9P1V8 674 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 LHX3Q9UBR4 397 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 MTRF1LQ9UGC7 380 aaKnown RBP9.29□□□□□ -0.92
USP4-202ENST00000351842 TBK1Q9UHD2 729 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 GGT7Q9UJ14 662 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 ARL5AQ9Y689 179 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 TRPM6Q9BX84 2022 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 C5orf60A6NFR6 353 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 FAM187AA6NFU0 413 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 OR51F1A6NGY5 319 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 GFRA2O00451 464 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 HTR7P34969 479 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 ELK3P41970 407 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 PFKPQ01813 784 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 STARD3Q14849 445 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 PARP6Q2NL67 630 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 ARMC12Q5T9G4 340 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 AFMIDQ63HM1 303 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 GPR153Q6NV75 609 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 FBXL19Q6PCT2 694 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 TSPAN33Q86UF1 283 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 PALM2Q8IXS6 379 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 PTPRN2Q92932 1015 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 SERPINB12Q96P63 405 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms