RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 HDAC3O15379 428 aa20.26■□□□□ 0.83
VPS53-201ENST00000291074 CPB1P15086 417 aa20.26■□□□□ 0.83
VPS53-201ENST00000291074 ANPEPP15144 967 aa20.26■□□□□ 0.83
VPS53-201ENST00000291074 RENBPP51606 427 aa20.26■□□□□ 0.83
VPS53-201ENST00000291074 NDST2P52849 883 aa20.26■□□□□ 0.83
VPS53-201ENST00000291074 LSM12Q3MHD2 195 aaKnown RBP20.26■□□□□ 0.83
VPS53-201ENST00000291074 SEL1L3Q68CR1 1132 aa20.26■□□□□ 0.83
VPS53-201ENST00000291074 ANO7Q6IWH7 933 aa20.26■□□□□ 0.83
VPS53-201ENST00000291074 LDB1Q86U70 411 aaPredicted RBP20.26■□□□□ 0.83
VPS53-201ENST00000291074 TTC1Q99614 292 aa20.26■□□□□ 0.83
VPS53-201ENST00000291074 SLC2A3P11169 496 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 ACADSP16219 412 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 TFEBP19484 476 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 SERPINH1P50454 418 aaKnown RBP20.25■□□□□ 0.83
VPS53-201ENST00000291074 TAF10Q12962 218 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 FSCBQ5H9T9 825 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 C10orf120Q5SQS8 335 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 RASIP1Q5U651 963 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 RNF135Q8IUD6 432 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 LRRC49Q8IUZ0 686 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 PGBD5Q8N414 524 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 TXNDC5Q8NBS9 432 aaKnown RBP20.25■□□□□ 0.83
VPS53-201ENST00000291074 GLT1D1Q96MS3 346 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 PPP1R2P1Q96PQ5 205 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 LENG8Q96PV6 779 aaPredicted RBP20.25■□□□□ 0.83
VPS53-201ENST00000291074 ZNF212Q9UDV6 495 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 COL6A2P12110 1019 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 YWHAQP27348 245 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 FAM189BP81408 668 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 CSHL1Q14406 222 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 PDCD2Q16342 344 aaPredicted RBP20.25■□□□□ 0.83
VPS53-201ENST00000291074 PPM1LQ5SGD2 360 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 TMEM198Q66K66 360 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 RSPO2Q6UXX9 243 aaPredicted RBP20.25■□□□□ 0.83
VPS53-201ENST00000291074 OR13J1Q8NGT2 312 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 MARK4Q96L34 752 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 SEPT5Q99719 369 aaPredicted RBP20.25■□□□□ 0.83
VPS53-201ENST00000291074 ATP13A1Q9HD20 1204 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.25■□□□□ 0.83
VPS53-201ENST00000291074 MARCH2Q9P0N8 246 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 CDH22Q9UJ99 828 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 SSX2IPQ9Y2D8 614 aa20.25■□□□□ 0.83
VPS53-201ENST00000291074 MTF2Q9Y483 593 aaPredicted RBP20.25■□□□□ 0.83
VPS53-201ENST00000291074 HEATR9A2RTY3 570 aa20.24■□□□□ 0.83
VPS53-201ENST00000291074 BAG2O95816 211 aa20.24■□□□□ 0.83
VPS53-201ENST00000291074 PBX3P40426 434 aa20.24■□□□□ 0.83
VPS53-201ENST00000291074 PTAR1Q7Z6K3 402 aaPredicted RBP20.24■□□□□ 0.83
VPS53-201ENST00000291074 PRKD2Q9BZL6 878 aa20.24■□□□□ 0.83
VPS53-201ENST00000291074 SLC12A8A0AV02 714 aa20.24■□□□□ 0.83
VPS53-201ENST00000291074 LUC7L3O95232 432 aaKnown RBP20.24■□□□□ 0.83
VPS53-201ENST00000291074 CRABP2P29373 138 aa20.24■□□□□ 0.83
VPS53-201ENST00000291074 SLC12A2P55011 1212 aa20.24■□□□□ 0.83
VPS53-201ENST00000291074 PRKAA1Q13131 559 aa20.24■□□□□ 0.83
VPS53-201ENST00000291074 MSLNQ13421 630 aaPredicted RBP20.24■□□□□ 0.83
VPS53-201ENST00000291074 BLMHQ13867 455 aa20.24■□□□□ 0.83
VPS53-201ENST00000291074 ARHGAP18Q8N392 663 aa20.24■□□□□ 0.83
VPS53-201ENST00000291074 RPRD1AQ96P16 312 aaPredicted RBP20.24■□□□□ 0.83
VPS53-201ENST00000291074 MRPL46Q9H2W6 279 aaKnown RBP20.24■□□□□ 0.83
VPS53-201ENST00000291074 ARNT2Q9HBZ2 717 aa20.24■□□□□ 0.83
VPS53-201ENST00000291074 IGSF5Q9NSI5 407 aa20.24■□□□□ 0.83
VPS53-201ENST00000291074 UXTQ9UBK9 157 aaPredicted RBP20.24■□□□□ 0.83
VPS53-201ENST00000291074 PACSIN3Q9UKS6 424 aa20.24■□□□□ 0.83
VPS53-201ENST00000291074 KCTD3Q9Y597 815 aa20.24■□□□□ 0.83
VPS53-201ENST00000291074 OR51F1A6NGY5 319 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 ACVRL1P37023 503 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 ARSDP51689 593 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 MGAT5BQ3V5L5 792 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 TCHHL1Q5QJ38 904 aaPredicted RBP20.23■□□□□ 0.83
VPS53-201ENST00000291074 MAP3K21Q5TCX8 1036 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 LCA5Q86VQ0 697 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 HPS6Q86YV9 775 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 ATP6V0D2Q8N8Y2 350 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 ACTRT2Q8TDY3 377 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 PYDC1Q8WXC3 89 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 BTN2A3PQ96KV6 586 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 POMKQ9H5K3 350 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 CYP4F12Q9HCS2 524 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 BATF3Q9NR55 127 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 ANGPTL2Q9UKU9 493 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 TET1Q8NFU7 2136 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 IGLV3-10A0A075B6K4 115 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 PIK3R1P27986 724 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 TRIP4Q15650 581 aaPredicted RBP20.23■□□□□ 0.83
VPS53-201ENST00000291074 CMPK2Q5EBM0 449 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 SIRPB2Q5JXA9 342 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 FAM219BQ5XKK7 198 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 PGM2L1Q6PCE3 622 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 RPS27LQ71UM5 84 aaKnown RBP20.23■□□□□ 0.83
VPS53-201ENST00000291074 HIPK4Q8NE63 616 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 CATSPER2Q96P56 530 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 CCSER2Q9H7U1 834 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 FNIP2Q9P278 1114 aa20.23■□□□□ 0.83
VPS53-201ENST00000291074 NT5C1B-RDH14C9J2C7 533 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 SYN3O14994 580 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 CCNT2O60583 730 aaKnown RBP20.22■□□□□ 0.83
VPS53-201ENST00000291074 VNN2O95498 520 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 KCNA5P22460 613 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 MAGEA11P43364 429 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 AP2B1P63010 937 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 POU4F1Q01851 419 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms