RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 MIOSQ9NXC5 875 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 PRSS51A0A1B0GVH4 220 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 IRAK2O43187 625 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 HSPA1AP0DMV8 641 aaKnown RBP18.89■□□□□ 0.61
CPSF3-201ENST00000238112 HSPA1BP0DMV9 641 aaKnown RBP18.89■□□□□ 0.61
CPSF3-201ENST00000238112 HSPA13P48723 471 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 SCNN1GP51170 649 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 TIGD5Q53EQ6 642 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 BRMS1LQ5PSV4 323 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 CNSTQ6PJW8 725 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 RNF135Q8IUD6 432 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 LILRA2Q8N149 483 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 CNBD2Q96M20 576 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 AP5M1Q9H0R1 490 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 EML4Q9HC35 981 aaKnown RBP18.89■□□□□ 0.61
CPSF3-201ENST00000238112 UTP6Q9NYH9 597 aaKnown RBP18.89■□□□□ 0.61
CPSF3-201ENST00000238112 TRIP12Q14669 1992 aaPredicted RBP18.89■□□□□ 0.61
CPSF3-201ENST00000238112 NEMP2A6NFY4 417 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 ARL5CA6NH57 179 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 ACOT8O14734 319 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 PAGE1O75459 146 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 SMIM18P0DKX4 95 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 CHRNA4P43681 627 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 SULT2A1Q06520 285 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 MAPRE2Q15555 327 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 AGAP9Q5VTM2 703 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 KLC3Q6P597 504 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 METTL23Q86XA0 190 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 TICAM1Q8IUC6 712 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 PELI3Q8N2H9 469 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 CCDC126Q96EE4 140 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 KLHL32Q96NJ5 620 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 CYP4F12Q9HCS2 524 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 MRPL40Q9NQ50 206 aaKnown RBP18.89■□□□□ 0.61
CPSF3-201ENST00000238112 IGSF5Q9NSI5 407 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 UBAP1Q9NZ09 502 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 ST3GAL5Q9UNP4 418 aa18.89■□□□□ 0.61
CPSF3-201ENST00000238112 KCNU1A8MYU2 1149 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 CLPTM1O96005 669 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 IGLV3-25P01717 112 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 CCR1P32246 355 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 RPL9P32969 192 aaKnown RBP18.88■□□□□ 0.61
CPSF3-201ENST00000238112 HTR7P34969 479 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 PSME3P61289 254 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 STX5Q13190 355 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 C9orf131Q5VYM1 1079 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 KIAA0408Q6ZU52 694 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 SCML4Q8N228 414 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 FAM156AQ8NDB6 213 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 GABPB2Q8TAK5 448 aaPredicted RBP18.88■□□□□ 0.61
CPSF3-201ENST00000238112 MRGPRX2Q96LB1 330 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 NDNQ99608 321 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 RTP3Q9BQQ7 232 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 PAAF1Q9BRP4 392 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 EPB41L1Q9H4G0 881 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 TRPC7Q9HCX4 862 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 RTN3O95197 1032 aaPredicted RBP18.88■□□□□ 0.61
CPSF3-201ENST00000238112 TNFAIP8O95379 198 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 HOXC13P31276 330 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 RPL5P46777 297 aaKnown RBP18.88■□□□□ 0.61
CPSF3-201ENST00000238112 PDAP1Q13442 181 aaKnown RBP18.88■□□□□ 0.61
CPSF3-201ENST00000238112 PCSK7Q16549 785 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 RBM20Q5T481 1227 aaKnown RBP18.88■□□□□ 0.61
CPSF3-201ENST00000238112 ZNF280DQ6N043 979 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 TAF2Q6P1X5 1199 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 GALNT4Q8N4A0 578 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 SCAMP5Q8TAC9 235 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 ASB9Q96DX5 294 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 FCRL2Q96LA5 508 aaPredicted RBP18.88■□□□□ 0.61
CPSF3-201ENST00000238112 ACBD6Q9BR61 282 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 TBC1D13Q9NVG8 400 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 CAMSAP3Q9P1Y5 1249 aaPredicted RBP18.88■□□□□ 0.61
CPSF3-201ENST00000238112 LZTS1Q9Y250 596 aa18.88■□□□□ 0.61
CPSF3-201ENST00000238112 MRPL42Q9Y6G3 142 aaKnown RBP18.88■□□□□ 0.61
CPSF3-201ENST00000238112 IPO13O94829 963 aaKnown RBP18.87■□□□□ 0.61
CPSF3-201ENST00000238112 ZNF865P0CJ78 1059 aaPredicted RBP18.87■□□□□ 0.61
CPSF3-201ENST00000238112 MRPS6P82932 125 aaKnown RBP18.87■□□□□ 0.61
CPSF3-201ENST00000238112 SQLEQ14534 574 aa18.87■□□□□ 0.61
CPSF3-201ENST00000238112 UPP1Q16831 310 aa18.87■□□□□ 0.61
CPSF3-201ENST00000238112 PAN2Q504Q3 1202 aaKnown RBP18.87■□□□□ 0.61
CPSF3-201ENST00000238112 TECRLQ5HYJ1 363 aa18.87■□□□□ 0.61
CPSF3-201ENST00000238112 BTBD8Q5XKL5 378 aa18.87■□□□□ 0.61
CPSF3-201ENST00000238112 FAM171BQ6P995 826 aa18.87■□□□□ 0.61
CPSF3-201ENST00000238112 RANBP10Q6VN20 620 aa18.87■□□□□ 0.61
CPSF3-201ENST00000238112 PCDH20Q8N6Y1 951 aaKnown RBP18.87■□□□□ 0.61
CPSF3-201ENST00000238112 SPPL2BQ8TCT7 592 aa18.87■□□□□ 0.61
CPSF3-201ENST00000238112 CALML6Q8TD86 181 aa18.87■□□□□ 0.61
CPSF3-201ENST00000238112 NDFIP2Q9NV92 336 aa18.87■□□□□ 0.61
CPSF3-201ENST00000238112 AURKAO14965 403 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 UBDO15205 165 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 LTA4HP09960 611 aaKnown RBP18.86■□□□□ 0.61
CPSF3-201ENST00000238112 PFKPQ01813 784 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 PSMD5Q16401 504 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 BEND5Q7L4P6 421 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 PRICKLE1Q96MT3 831 aaPredicted RBP18.86■□□□□ 0.61
CPSF3-201ENST00000238112 ABCC13Q9NSE7 274 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 SUCOQ9UBS9 1254 aaKnown RBP18.86■□□□□ 0.61
CPSF3-201ENST00000238112 SFMBT1Q9UHJ3 866 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 APPL1Q9UKG1 709 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 PCDHGA7Q9Y5G6 932 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms