RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 TMEM80Q96HE8 168 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 ELMO2Q96JJ3 720 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 C7orf25Q9BPX7 421 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 BDH2Q9BUT1 245 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 C1QTNF1Q9BXJ1 281 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 ANKRD60Q9BZ19 345 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 LRRC19Q9H756 370 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 NOL11Q9H8H0 719 aaKnown RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 WDR41Q9HAD4 459 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 RAB20Q9NX57 234 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 IMPAD1Q9NX62 359 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 SCN3BQ9NY72 215 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 ZC3H7BQ9UGR2 993 aaKnown RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 MKLN1Q9UL63 735 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 PXDNLA1KZ92 1463 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 BHMG1C9JSJ3 638 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 LOC110117498-PIK3R3F6TDL0 507 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 EYA2O00167 538 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 ICAM2P13598 275 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 NUP62P37198 522 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 IL15P40933 162 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 NSFP46459 744 aaKnown RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 ARSEP51690 589 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 ANTXR2P58335 489 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 EEF1A1P68104 462 aaKnown RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 EEF1A2Q05639 463 aaKnown RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 MERTKQ12866 999 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 EEF1A1P5Q5VTE0 462 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 KRT39Q6A163 491 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 GLRX5Q86SX6 157 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 SGMS1Q86VZ5 419 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 DNAJC10Q8IXB1 793 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 ZBTB44Q8NCP5 570 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 OR10T2Q8NGX3 314 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 SLC7A14Q8TBB6 771 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 FRS2Q8WU20 508 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 ASZ1Q8WWH4 475 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 RIT1Q92963 219 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 TNFRSF25Q93038 417 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 GJD4Q96KN9 370 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 FAM167AQ96KS9 214 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 MOGAT1Q96PD6 335 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 SLC2A11Q9BYW1 496 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 NANOGQ9H9S0 305 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 BIN3Q9NQY0 253 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 IFT80Q9P2H3 777 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 DIMT1Q9UNQ2 313 aaKnown RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 ERVK-19Q9WJR5 959 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 CSADQ9Y600 493 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 FAM205CA6NFA0 338 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 GRXCR2A6NFK2 248 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 TRIM49D1C9J1S8 452 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 ANKRD63C9JTQ0 380 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 ABCB7O75027 752 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 ATF7P17544 494 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 CYP2C18P33260 490 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 DDOSTP39656 456 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 GARSP41250 739 aaKnown RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 MTHFRP42898 656 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 HARS2P49590 506 aaKnown RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 PSMD4P55036 377 aaKnown RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 PPIL2Q13356 520 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 STARD3Q14849 445 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 C6orf132Q5T0Z8 1188 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 NIM1KQ8IY84 436 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF564Q8TBZ8 553 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 LRTOMTQ8WZ04 291 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 TRIB2Q92519 343 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 HSFY1Q96LI6 401 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 CCDC106Q9BWC9 280 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 ANO3Q9BYT9 981 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 VRTNQ9H8Y1 702 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 MTMR4Q9NYA4 1195 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 COPZ2Q9P299 210 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 MADDQ8WXG6 1647 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 A0A1W2PRQ8 180 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 LZTS3O60299 673 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 FAM189A1O60320 539 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 FTLP02792 175 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 OR52Z1P0C646 297 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 CYP11B1P15538 503 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 ARNTP27540 789 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 AP1S2P56377 157 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 GRSF1Q12849 480 aaKnown RBP eCLIP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 EPHA10Q5JZY3 1008 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 JADE1Q6IE81 842 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 RHOUQ7L0Q8 258 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 PRSS42Q7Z5A4 293 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 FBXO33Q7Z6M2 555 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 RHPN2Q8IUC4 686 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 SPATA2LQ8IUW3 424 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 TAGAPQ8N103 731 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 SLC37A3Q8NCC5 494 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 GOT1L1Q8NHS2 421 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 METTL6Q8TCB7 284 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 LARP4BQ92615 738 aaKnown RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 FBXW5Q969U6 566 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 OTULINQ96BN8 352 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 POP1Q99575 1024 aaKnown RBP5.79□□□□□ -1.48
SCN1A-216ENST00000637968 NAA50Q9GZZ1 169 aaKnown RBP5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms