RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 KRT85P78386 507 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 STK3Q13188 491 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 BIRC3Q13489 604 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 SMAD1Q15797 465 aaKnown RBP4.73□□□□□ -1.65
LINC00540-201ENST00000611481 CDC37Q16543 378 aaPredicted RBP4.73□□□□□ -1.65
LINC00540-201ENST00000611481 DUOXA1Q1HG43 343 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 CT83Q5H943 113 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 LYSMD4Q5XG99 296 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 AFMIDQ63HM1 303 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 DHRS13Q6UX07 377 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 FKBP9P1Q75LS8 142 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 LPCAT2Q7L5N7 544 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 RASSF3Q86WH2 238 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 KIAA0319LQ8IZA0 1049 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 CCDC89Q8N998 374 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 EXD3Q8N9H8 876 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 PPHLN1Q8NEY8 458 aaKnown RBP4.73□□□□□ -1.65
LINC00540-201ENST00000611481 GPR156Q8NFN8 814 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 HASPINQ8TF76 798 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 SNRNP27Q8WVK2 155 aaKnown RBP4.73□□□□□ -1.65
LINC00540-201ENST00000611481 SARAFQ96BY9 339 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 MPP4Q96JB8 637 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 MBOAT7Q96N66 472 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 CPVLQ9H3G5 476 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.73□□□□□ -1.65
LINC00540-201ENST00000611481 MARCH5Q9NX47 278 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 GTSE1Q9NYZ3 720 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 PILRBQ9UKJ0 227 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 SIK3Q9Y2K2 1263 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 VWA8A3KMH1 1905 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 SVILO95425 2214 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 PCDH15Q96QU1 1955 aa4.73□□□□□ -1.65
LINC00540-201ENST00000611481 ZMYM6O95789 1325 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 MYH7P12883 1935 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 TSPY2A6NKD2 308 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 HEPACAM2A8MVW5 462 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 PMM2O15305 246 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 FIBPO43427 364 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 ULK1O75385 1050 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 OFD1O75665 1012 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 GJB3O75712 270 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 VTNP04004 478 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 CELA2AP08217 269 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 KLRC1P26715 233 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 HOXA9P31269 272 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 DPP6P42658 865 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 OR1G1P47890 313 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 CCT5P48643 541 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 TDO2P48775 406 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 UCNP55089 124 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 CLDN6P56747 220 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 GRSF1Q12849 480 aaKnown RBP eCLIP4.72□□□□□ -1.65
LINC00540-201ENST00000611481 KLF1Q13351 362 aaPredicted RBP4.72□□□□□ -1.65
LINC00540-201ENST00000611481 DMC1Q14565 340 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 IGFBP7Q16270 282 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 SRSF7Q16629 238 aaKnown RBP eCLIP4.72□□□□□ -1.65
LINC00540-201ENST00000611481 UGT8Q16880 541 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 ICE2Q659A1 982 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 ANO7Q6IWH7 933 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 PRSS55Q6UWB4 352 aaPredicted RBP4.72□□□□□ -1.65
LINC00540-201ENST00000611481 FAM180AQ6UWF9 173 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 STOX1Q6ZVD7 989 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 TTC30AQ86WT1 665 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 TICAM1Q8IUC6 712 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 MFSD6LQ8IWD5 586 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 ACRBPQ8NEB7 543 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 TSTD1Q8NFU3 115 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 FBXO18Q8NFZ0 1043 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 CEP76Q8TAP6 659 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 URGCPQ8TCY9 931 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 SSH3Q8TE77 659 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 RLN3Q8WXF3 142 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 SEPT1Q8WYJ6 367 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 DDB2Q92466 427 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 SLC5A5Q92911 643 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 SMARCD2Q92925 531 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 TNPO1Q92973 898 aaKnown RBP4.72□□□□□ -1.65
LINC00540-201ENST00000611481 TCEAL4Q96EI5 215 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 HSPBAP1Q96EW2 488 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 TMEM175Q9BSA9 504 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.72□□□□□ -1.65
LINC00540-201ENST00000611481 ANLNQ9NQW6 1124 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 DACT1Q9NYF0 836 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 FNIP2Q9P278 1114 aa4.72□□□□□ -1.65
LINC00540-201ENST00000611481 FBXO2Q9UK22 296 aaPredicted RBP4.72□□□□□ -1.65
LINC00540-201ENST00000611481 MRPL11Q9Y3B7 192 aaKnown RBP4.72□□□□□ -1.65
LINC00540-201ENST00000611481 MORC2Q9Y6X9 1032 aaPredicted RBP4.72□□□□□ -1.65
LINC00540-201ENST00000611481 TNRC6BQ9UPQ9 1833 aaKnown RBP4.72□□□□□ -1.65
LINC00540-201ENST00000611481 TRGV11A0A075B6L2 103 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 WDR27A2RRH5 827 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 F8W810 466 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 CHADO15335 359 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 YY2O15391 372 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 GPR32O75388 356 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 SURF6O75683 361 aaKnown RBP4.71□□□□□ -1.66
LINC00540-201ENST00000611481 PRSS23O95084 383 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 EGFP01133 1207 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 GOLGA8HP0CJ92 632 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 PDHBP11177 359 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 JUPP14923 745 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms