RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 ADRB3P13945 408 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 MAT2AP31153 395 aaKnown RBP14.04□□□□□ -0.16
UPF1-205ENST00000598209 AFF3P51826 1226 aaKnown RBP14.04□□□□□ -0.16
UPF1-205ENST00000598209 ATXN3P54252 364 aaPredicted RBP14.04□□□□□ -0.16
UPF1-205ENST00000598209 GRIK2Q13002 908 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 LBRQ14739 615 aaKnown RBP14.04□□□□□ -0.16
UPF1-205ENST00000598209 TMCO4Q5TGY1 634 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 LRRC38Q5VT99 294 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 GDPD4Q6W3E5 623 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 PRPF39Q86UA1 669 aaKnown RBP14.04□□□□□ -0.16
UPF1-205ENST00000598209 RHOT1Q8IXI2 618 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 PQLC3Q8N755 202 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 TSEN2Q8NCE0 465 aaKnown RBP14.04□□□□□ -0.16
UPF1-205ENST00000598209 SLC6A18Q96N87 628 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 KLHL32Q96NJ5 620 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 ZNF599Q96NL3 588 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 CPEB1Q9BZB8 566 aaKnown RBP14.04□□□□□ -0.16
UPF1-205ENST00000598209 GOLPH3Q9H4A6 298 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 SEPT3Q9UH03 358 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 ALG6Q9Y672 507 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 KNL1Q8NG31 2342 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 A0A1B0GVT2 93 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 C3orf70A6NLC5 250 aaPredicted RBP14.03□□□□□ -0.16
UPF1-205ENST00000598209 MAFKO60675 156 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 PCDH8O95206 1070 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 PIGNO95427 931 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 RGRP47804 291 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 GRIA4P48058 902 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 CSNK1DP48730 415 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 CSNK1EP49674 416 aaKnown RBP14.03□□□□□ -0.16
UPF1-205ENST00000598209 RENBPP51606 427 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 RACK1P63244 317 aaKnown RBP14.03□□□□□ -0.16
UPF1-205ENST00000598209 BNC1Q01954 994 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 SLC10A7Q0GE19 358 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 GALNT2Q10471 571 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 GRM3Q14832 879 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 TEAD4Q15561 434 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 C11orf63Q6NUN7 778 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 NEK5Q6P3R8 708 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 LAYNQ6UX15 382 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 SRLQ86TD4 932 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 LRRC49Q8IUZ0 686 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 MINDY1Q8N5J2 469 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 TPCN2Q8NHX9 752 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 SERAC1Q96JX3 654 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 RNF157Q96PX1 679 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 ZDHHC5Q9C0B5 715 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 DDX56Q9NY93 547 aaKnown RBP14.03□□□□□ -0.16
UPF1-205ENST00000598209 SALL4Q9UJQ4 1053 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 FADS3Q9Y5Q0 445 aa14.03□□□□□ -0.16
UPF1-205ENST00000598209 A0A1W2PQU0 124 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 DCDC2BA2VCK2 349 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 ZNF487B1APH4 448 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 MUSKO15146 869 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 PSTPIP1O43586 416 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 AP1G1O43747 822 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 MAP3K6O95382 1288 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 PEX11BO96011 259 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 NUDT1P36639 197 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 GARSP41250 739 aaKnown RBP14.02□□□□□ -0.17
UPF1-205ENST00000598209 ABL2P42684 1182 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 VAV2P52735 878 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 GSDMDP57764 484 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 NSUN2Q08J23 767 aaKnown RBP eCLIP14.02□□□□□ -0.17
UPF1-205ENST00000598209 ZNF235Q14590 738 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 UAP1L1Q3KQV9 507 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 SETMARQ53H47 684 aaPredicted RBP14.02□□□□□ -0.17
UPF1-205ENST00000598209 ODF2Q5BJF6 829 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 ADAT2Q7Z6V5 191 aaKnown RBP14.02□□□□□ -0.17
UPF1-205ENST00000598209 KIAA1328Q86T90 577 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 HORMAD1Q86X24 394 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 VSIG1Q86XK7 387 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 OR2I1PQ8NGU4 316 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 NSMCE1Q8WV22 266 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 RAB7BQ96AH8 199 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 RNF25Q96BH1 459 aaPredicted RBP14.02□□□□□ -0.17
UPF1-205ENST00000598209 PSKH2Q96QS6 385 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 TUBGCP5Q96RT8 1024 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 LACRTQ9GZZ8 138 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 AASDHPPTQ9NRN7 309 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 DKK3Q9UBP4 350 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 DMTF1Q9Y222 760 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 DUSP10Q9Y6W6 482 aa14.02□□□□□ -0.17
UPF1-205ENST00000598209 DCHS1Q96JQ0 3298 aa14.01□□□□□ -0.17
UPF1-205ENST00000598209 BTNL10A8MVZ5 291 aa14.01□□□□□ -0.17
UPF1-205ENST00000598209 TM4SF5O14894 197 aa14.01□□□□□ -0.17
UPF1-205ENST00000598209 WNT9AO14904 365 aa14.01□□□□□ -0.17
UPF1-205ENST00000598209 PJA2O43164 708 aa14.01□□□□□ -0.17
UPF1-205ENST00000598209 CD38P28907 300 aa14.01□□□□□ -0.17
UPF1-205ENST00000598209 HSPA9P38646 679 aaKnown RBP14.01□□□□□ -0.17
UPF1-205ENST00000598209 SCNN1BP51168 640 aa14.01□□□□□ -0.17
UPF1-205ENST00000598209 NAP1L1P55209 391 aaKnown RBP14.01□□□□□ -0.17
UPF1-205ENST00000598209 GBE1Q04446 702 aa14.01□□□□□ -0.17
UPF1-205ENST00000598209 SLC10A2Q12908 348 aaPredicted RBP14.01□□□□□ -0.17
UPF1-205ENST00000598209 IFI16Q16666 785 aaKnown RBP14.01□□□□□ -0.17
UPF1-205ENST00000598209 ZNF284Q2VY69 593 aa14.01□□□□□ -0.17
UPF1-205ENST00000598209 SEL1L3Q68CR1 1132 aa14.01□□□□□ -0.17
UPF1-205ENST00000598209 NAPEPLDQ6IQ20 393 aa14.01□□□□□ -0.17
UPF1-205ENST00000598209 DGLUCYQ7Z3D6 616 aa14.01□□□□□ -0.17
UPF1-205ENST00000598209 DAAM2Q86T65 1068 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms