RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 FLT3P36888 993 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 ETFBP38117 255 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 CCNHP51946 323 aaPredicted RBP12.73□□□□□ -0.37
TRIM28-212ENST00000597995 PFN3P60673 137 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 ARF5P84085 180 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 SKOR1P84550 965 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 GNA12Q03113 381 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 ARHGAP40Q5TG30 622 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 NAA35Q5VZE5 725 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 ARCQ7LC44 396 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 BTN2A2Q8WVV5 523 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 CCDC97Q96F63 343 aaPredicted RBP12.73□□□□□ -0.37
TRIM28-212ENST00000597995 VCPIP1Q96JH7 1222 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 TBATAQ96M53 351 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 PCDHB18PQ96TA0 734 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 PDCL3Q9H2J4 239 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 RETREG1Q9H6L5 497 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 CPNE5Q9HCH3 593 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 TMPRSS4Q9NRS4 437 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 PPARGC1AQ9UBK2 798 aaKnown RBP12.73□□□□□ -0.37
TRIM28-212ENST00000597995 TMEM59LQ9UK28 342 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 PCDHGA8Q9Y5G5 932 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 CPED1A4D0V7 1026 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 J3QKU1 62 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 SRGAP2O75044 1071 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 TCEA3O75764 348 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 LSM8O95777 96 aaKnown RBP12.72□□□□□ -0.37
TRIM28-212ENST00000597995 CD160O95971 181 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 JUNDP17535 347 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 TGM2P21980 687 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 RBMS1P29558 406 aaKnown RBP12.72□□□□□ -0.37
TRIM28-212ENST00000597995 MLLT3P42568 568 aaPredicted RBP12.72□□□□□ -0.37
TRIM28-212ENST00000597995 DNA2P51530 1060 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 CDR2Q01850 454 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 VAC14Q08AM6 782 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 PTP4A2Q12974 167 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 PDE1CQ14123 709 aaPredicted RBP12.72□□□□□ -0.37
TRIM28-212ENST00000597995 PTK2BQ14289 1009 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 NR0B2Q15466 257 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 CDKN3Q16667 212 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 RAB6CQ53S08 254 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 FKBP15Q5T1M5 1219 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 FAM102AQ5T9C2 384 aaPredicted RBP12.72□□□□□ -0.37
TRIM28-212ENST00000597995 GUSBP11Q6P575 273 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 PARS2Q7L3T8 475 aaKnown RBP12.72□□□□□ -0.37
TRIM28-212ENST00000597995 EFL1Q7Z2Z2 1120 aaKnown RBP12.72□□□□□ -0.37
TRIM28-212ENST00000597995 AOPEPQ8N6M6 819 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 WDR48Q8TAF3 677 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 LMX1AQ8TE12 382 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 SLC46A1Q96NT5 459 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 ERGIC2Q96RQ1 377 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 IL12RB2Q99665 862 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 RAB6CQ9H0N0 254 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 HECAQ9UBI9 543 aaPredicted RBP12.72□□□□□ -0.37
TRIM28-212ENST00000597995 SPASTQ9UBP0 616 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 KLF15Q9UIH9 416 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 SATB2Q9UPW6 733 aa12.72□□□□□ -0.37
TRIM28-212ENST00000597995 IGLON5A6NGN9 336 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 C16orf96A6NNT2 1141 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 GOLGA8SH3BPF8 625 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 TOR1BO14657 336 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 SPINT1O43278 529 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 MMP8P22894 467 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 RPIAP49247 311 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 GEMIN4P57678 1058 aaKnown RBP12.71□□□□□ -0.37
TRIM28-212ENST00000597995 EIF2B5Q13144 721 aaKnown RBP12.71□□□□□ -0.37
TRIM28-212ENST00000597995 DEFB133Q30KQ1 61 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 ANO6Q4KMQ2 910 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 ZNF805Q5CZA5 627 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 C3orf38Q5JPI3 329 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 RBM44Q6ZP01 1051 aaKnown RBP12.71□□□□□ -0.37
TRIM28-212ENST00000597995 ZNF677Q86XU0 584 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 SLC30A5Q8TAD4 765 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 TTC9Q92623 222 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 GLMNQ92990 594 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 NAT6Q93015 286 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 ARHGEF26Q96DR7 871 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 ATXN7L3BQ96GX2 97 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 PRR11Q96HE9 360 aaPredicted RBP12.71□□□□□ -0.37
TRIM28-212ENST00000597995 BOCQ9BWV1 1114 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 OSBPL1AQ9BXW6 950 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 ZDHHC6Q9H6R6 413 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 FCF1Q9Y324 198 aaKnown RBP12.71□□□□□ -0.37
TRIM28-212ENST00000597995 ENTPD2Q9Y5L3 495 aa12.71□□□□□ -0.37
TRIM28-212ENST00000597995 RP1P56715 2156 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 A0A1W2PNU3 283 aaPredicted RBP12.7□□□□□ -0.38
TRIM28-212ENST00000597995 CDRT15L2A8MXV6 281 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 LMO7DNF2Z398 122 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 NEMP1O14524 444 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 TEX33O43247 280 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 GJB6O95452 261 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 POP4O95707 220 aaKnown RBP12.7□□□□□ -0.38
TRIM28-212ENST00000597995 GSRP00390 522 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 UNGP13051 313 aaPredicted RBP12.7□□□□□ -0.38
TRIM28-212ENST00000597995 ABL2P42684 1182 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 MAPKAPK2P49137 400 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 THOP1P52888 689 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 SNRPD1P62314 119 aaKnown RBP12.7□□□□□ -0.38
TRIM28-212ENST00000597995 YPEL5P62699 121 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 NRG1Q02297 640 aaPredicted RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms