RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 MGAT1P26572 445 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 MAGEA4P43358 317 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 PMS2P54278 862 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 CERCAMQ5T4B2 595 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 C22orf39Q6P5X5 142 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 NCEH1Q6PIU2 408 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 CAPN12Q6ZSI9 719 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 Q6ZVU0 165 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 PLCD3Q8N3E9 789 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 CSGALNACT1Q8TDX6 532 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 EZH1Q92800 747 aaPredicted RBP25.41■■□□□ 1.66
SHMT1-207ENST00000580002 ERLEC1Q96DZ1 483 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 SIGLEC10Q96LC7 697 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 LRRC40Q9H9A6 602 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 CASS4Q9NQ75 786 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 NINJ2Q9NZG7 142 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 WASH3PC4AMC7 463 aa25.4■■□□□ 1.66
SHMT1-207ENST00000580002 ALOX15BO15296 676 aa25.4■■□□□ 1.66
SHMT1-207ENST00000580002 KAT7O95251 611 aa25.4■■□□□ 1.66
SHMT1-207ENST00000580002 DLDP09622 509 aaKnown RBP25.4■■□□□ 1.66
SHMT1-207ENST00000580002 HSD17B3P37058 310 aa25.4■■□□□ 1.66
SHMT1-207ENST00000580002 ELK3P41970 407 aa25.4■■□□□ 1.66
SHMT1-207ENST00000580002 CDK16Q00536 496 aa25.4■■□□□ 1.66
SHMT1-207ENST00000580002 SULT2A1Q06520 285 aa25.4■■□□□ 1.66
SHMT1-207ENST00000580002 MPP3Q13368 585 aa25.4■■□□□ 1.66
SHMT1-207ENST00000580002 RANBP10Q6VN20 620 aa25.4■■□□□ 1.66
SHMT1-207ENST00000580002 PPP1R21Q6ZMI0 780 aa25.4■■□□□ 1.66
SHMT1-207ENST00000580002 SRLQ86TD4 932 aa25.4■■□□□ 1.66
SHMT1-207ENST00000580002 PDIK1LQ8N165 341 aa25.4■■□□□ 1.66
SHMT1-207ENST00000580002 WFIKKN2Q8TEU8 576 aa25.4■■□□□ 1.66
SHMT1-207ENST00000580002 FRS2Q8WU20 508 aa25.4■■□□□ 1.66
SHMT1-207ENST00000580002 FUT8Q9BYC5 575 aa25.4■■□□□ 1.66
SHMT1-207ENST00000580002 LRRC4CQ9HCJ2 640 aa25.4■■□□□ 1.66
SHMT1-207ENST00000580002 CHMP2BQ9UQN3 213 aa25.4■■□□□ 1.66
SHMT1-207ENST00000580002 DYNC1LI1Q9Y6G9 523 aaKnown RBP25.4■■□□□ 1.66
SHMT1-207ENST00000580002 F5P12259 2224 aa25.39■■□□□ 1.66
SHMT1-207ENST00000580002 PDHA1P08559 390 aa25.39■■□□□ 1.66
SHMT1-207ENST00000580002 NSUN2Q08J23 767 aaKnown RBP eCLIP25.39■■□□□ 1.66
SHMT1-207ENST00000580002 TRAF2Q12933 501 aa25.39■■□□□ 1.66
SHMT1-207ENST00000580002 PTPRRQ15256 657 aa25.39■■□□□ 1.66
SHMT1-207ENST00000580002 CENPUQ71F23 418 aa25.39■■□□□ 1.66
SHMT1-207ENST00000580002 CHST14Q8NCH0 376 aa25.39■■□□□ 1.66
SHMT1-207ENST00000580002 FBXO36Q8NEA4 188 aa25.39■■□□□ 1.66
SHMT1-207ENST00000580002 PLAC1Q9HBJ0 212 aa25.39■■□□□ 1.66
SHMT1-207ENST00000580002 CHKBQ9Y259 395 aa25.39■■□□□ 1.66
SHMT1-207ENST00000580002 SMAPO00193 183 aa25.39■■□□□ 1.65
SHMT1-207ENST00000580002 PIGNO95427 931 aa25.39■■□□□ 1.65
SHMT1-207ENST00000580002 HLA-EP13747 358 aa25.39■■□□□ 1.65
SHMT1-207ENST00000580002 GEMIN4P57678 1058 aaKnown RBP25.39■■□□□ 1.65
SHMT1-207ENST00000580002 CASP8Q14790 479 aa25.39■■□□□ 1.65
SHMT1-207ENST00000580002 DNAAF3Q8N9W5 541 aa25.39■■□□□ 1.65
SHMT1-207ENST00000580002 UBLCP1Q8WVY7 318 aaPredicted RBP25.39■■□□□ 1.65
SHMT1-207ENST00000580002 ACOX2Q99424 681 aa25.39■■□□□ 1.65
SHMT1-207ENST00000580002 SYBUQ9NX95 663 aa25.39■■□□□ 1.65
SHMT1-207ENST00000580002 ERI2A8K979 691 aaKnown RBP25.38■■□□□ 1.65
SHMT1-207ENST00000580002 NDC80O14777 642 aa25.38■■□□□ 1.65
SHMT1-207ENST00000580002 ATP9BO43861 1147 aa25.38■■□□□ 1.65
SHMT1-207ENST00000580002 PRLP01236 227 aa25.38■■□□□ 1.65
SHMT1-207ENST00000580002 SERPINF2P08697 491 aa25.38■■□□□ 1.65
SHMT1-207ENST00000580002 GALNT3Q14435 633 aa25.38■■□□□ 1.65
SHMT1-207ENST00000580002 DPY19L3Q6ZPD9 716 aa25.38■■□□□ 1.65
SHMT1-207ENST00000580002 CAMK1DQ8IU85 385 aa25.38■■□□□ 1.65
SHMT1-207ENST00000580002 RYBPQ8N488 228 aaPredicted RBP25.38■■□□□ 1.65
SHMT1-207ENST00000580002 FSD1LQ9BXM9 530 aa25.38■■□□□ 1.65
SHMT1-207ENST00000580002 FOXP3Q9BZS1 431 aa25.38■■□□□ 1.65
SHMT1-207ENST00000580002 TEX264Q9Y6I9 313 aa25.38■■□□□ 1.65
SHMT1-207ENST00000580002 SPECC1L-ADORA2AF8WAN1 911 aa25.37■■□□□ 1.65
SHMT1-207ENST00000580002 PSMD3O43242 534 aa25.37■■□□□ 1.65
SHMT1-207ENST00000580002 ACSL3O95573 720 aa25.37■■□□□ 1.65
SHMT1-207ENST00000580002 PRKCGP05129 697 aa25.37■■□□□ 1.65
SHMT1-207ENST00000580002 ATP5BP06576 529 aaKnown RBP25.37■■□□□ 1.65
SHMT1-207ENST00000580002 ATXN1LP0C7T5 689 aaKnown RBP25.37■■□□□ 1.65
SHMT1-207ENST00000580002 GPX6P59796 221 aa25.37■■□□□ 1.65
SHMT1-207ENST00000580002 SLMAPQ14BN4 828 aa25.37■■□□□ 1.65
SHMT1-207ENST00000580002 MICALCLQ6ZW33 695 aa25.37■■□□□ 1.65
SHMT1-207ENST00000580002 OR2AP1Q8NGE2 309 aa25.37■■□□□ 1.65
SHMT1-207ENST00000580002 OR2W6PQ8NHA6 318 aa25.37■■□□□ 1.65
SHMT1-207ENST00000580002 TRIB3Q96RU7 358 aa25.37■■□□□ 1.65
SHMT1-207ENST00000580002 XAB2Q9HCS7 855 aaKnown RBP25.37■■□□□ 1.65
SHMT1-207ENST00000580002 VPS45Q9NRW7 570 aa25.37■■□□□ 1.65
SHMT1-207ENST00000580002 HECAQ9UBI9 543 aaPredicted RBP25.37■■□□□ 1.65
SHMT1-207ENST00000580002 RAI2Q9Y5P3 530 aa25.37■■□□□ 1.65
SHMT1-207ENST00000580002 KIAA1549LQ6ZVL6 1849 aa25.37■■□□□ 1.65
SHMT1-207ENST00000580002 TRIOO75962 3097 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 LOC285095A0A1B0GVY8 99 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 CTHP32929 405 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 SARNPP82979 210 aaKnown RBP25.36■■□□□ 1.65
SHMT1-207ENST00000580002 CDK18Q07002 472 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 CCDC38Q502W7 563 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 SIRPB2Q5JXA9 342 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 NAPEPLDQ6IQ20 393 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 CES3Q6UWW8 571 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 MREGQ8N565 214 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 OR2A12Q8NGT7 310 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 CCDC78A2IDD5 438 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 GOLGA6CA6NDK9 693 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 GOLGA6BA6NDN3 693 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 LOC730098B7Z3J9 87 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 GOLGA6DP0CG33 693 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 MLNP12872 115 aa25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms