RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 DOCK9Q9BZ29 2069 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 C16orf96A6NNT2 1141 aa19.58■□□□□ 0.72
SS18-208ENST00000577751 PSTPIP1O43586 416 aa19.58■□□□□ 0.72
SS18-208ENST00000577751 UGT2B4P06133 528 aa19.58■□□□□ 0.72
SS18-208ENST00000577751 RGRP47804 291 aa19.58■□□□□ 0.72
SS18-208ENST00000577751 PPP2CBP62714 309 aa19.58■□□□□ 0.72
SS18-208ENST00000577751 PPP2CAP67775 309 aa19.58■□□□□ 0.72
SS18-208ENST00000577751 SLC10A7Q0GE19 358 aa19.58■□□□□ 0.72
SS18-208ENST00000577751 GALNT2Q10471 571 aa19.58■□□□□ 0.72
SS18-208ENST00000577751 GRM3Q14832 879 aa19.58■□□□□ 0.72
SS18-208ENST00000577751 TMCO4Q5TGY1 634 aa19.58■□□□□ 0.72
SS18-208ENST00000577751 STPG1Q5TH74 334 aa19.58■□□□□ 0.72
SS18-208ENST00000577751 ATPAF2Q8N5M1 289 aa19.58■□□□□ 0.72
SS18-208ENST00000577751 KLHL32Q96NJ5 620 aa19.58■□□□□ 0.72
SS18-208ENST00000577751 CINPQ9BW66 212 aaPredicted RBP19.58■□□□□ 0.72
SS18-208ENST00000577751 TM9SF3Q9HD45 589 aa19.58■□□□□ 0.72
SS18-208ENST00000577751 FSCN3Q9NQT6 498 aa19.58■□□□□ 0.72
SS18-208ENST00000577751 SEPT3Q9UH03 358 aa19.58■□□□□ 0.72
SS18-208ENST00000577751 DCHS1Q96JQ0 3298 aa19.57■□□□□ 0.72
SS18-208ENST00000577751 CEP250Q9BV73 2442 aa19.57■□□□□ 0.72
SS18-208ENST00000577751 ARHGAP33O14559 1287 aa19.57■□□□□ 0.72
SS18-208ENST00000577751 SLC30A4O14863 429 aa19.57■□□□□ 0.72
SS18-208ENST00000577751 MUSKO15146 869 aa19.57■□□□□ 0.72
SS18-208ENST00000577751 AP1G1O43747 822 aa19.57■□□□□ 0.72
SS18-208ENST00000577751 GARSP41250 739 aaKnown RBP19.57■□□□□ 0.72
SS18-208ENST00000577751 AFF3P51826 1226 aaKnown RBP19.57■□□□□ 0.72
SS18-208ENST00000577751 GBE1Q04446 702 aa19.57■□□□□ 0.72
SS18-208ENST00000577751 SLC10A2Q12908 348 aaPredicted RBP19.57■□□□□ 0.72
SS18-208ENST00000577751 SLC9A4Q6AI14 798 aa19.57■□□□□ 0.72
SS18-208ENST00000577751 FBXL19Q6PCT2 694 aa19.57■□□□□ 0.72
SS18-208ENST00000577751 PLD5Q8N7P1 536 aa19.57■□□□□ 0.72
SS18-208ENST00000577751 HCAR2Q8TDS4 363 aa19.57■□□□□ 0.72
SS18-208ENST00000577751 RAB7BQ96AH8 199 aa19.57■□□□□ 0.72
SS18-208ENST00000577751 TSGA13Q96PP4 275 aa19.57■□□□□ 0.72
SS18-208ENST00000577751 DKK3Q9UBP4 350 aa19.57■□□□□ 0.72
SS18-208ENST00000577751 CDV3Q9UKY7 258 aaKnown RBP19.57■□□□□ 0.72
SS18-208ENST00000577751 FADS3Q9Y5Q0 445 aa19.57■□□□□ 0.72
SS18-208ENST00000577751 ANKRD36A6QL64 1941 aa19.57■□□□□ 0.72
SS18-208ENST00000577751 DNAH14Q0VDD8 3507 aa19.56■□□□□ 0.72
SS18-208ENST00000577751 TM4SF5O14894 197 aa19.56■□□□□ 0.72
SS18-208ENST00000577751 RNGTTO60942 597 aaKnown RBP19.56■□□□□ 0.72
SS18-208ENST00000577751 KRT1P04264 644 aa19.56■□□□□ 0.72
SS18-208ENST00000577751 SYPP08247 313 aa19.56■□□□□ 0.72
SS18-208ENST00000577751 NUDT1P36639 197 aa19.56■□□□□ 0.72
SS18-208ENST00000577751 ABL2P42684 1182 aa19.56■□□□□ 0.72
SS18-208ENST00000577751 ID4P47928 161 aa19.56■□□□□ 0.72
SS18-208ENST00000577751 GRIA4P48058 902 aa19.56■□□□□ 0.72
SS18-208ENST00000577751 RENBPP51606 427 aa19.56■□□□□ 0.72
SS18-208ENST00000577751 RACK1P63244 317 aaKnown RBP19.56■□□□□ 0.72
SS18-208ENST00000577751 BNC1Q01954 994 aa19.56■□□□□ 0.72
SS18-208ENST00000577751 TAZQ16635 292 aa19.56■□□□□ 0.72
SS18-208ENST00000577751 DAAM2Q86T65 1068 aa19.56■□□□□ 0.72
SS18-208ENST00000577751 SRLQ86TD4 932 aa19.56■□□□□ 0.72
SS18-208ENST00000577751 PRPF39Q86UA1 669 aaKnown RBP19.56■□□□□ 0.72
SS18-208ENST00000577751 TEX26Q8N6G2 289 aa19.56■□□□□ 0.72
SS18-208ENST00000577751 FATE1Q969F0 183 aa19.56■□□□□ 0.72
SS18-208ENST00000577751 RNF25Q96BH1 459 aaPredicted RBP19.56■□□□□ 0.72
SS18-208ENST00000577751 ZNF641Q96N77 438 aaPredicted RBP19.56■□□□□ 0.72
SS18-208ENST00000577751 TUBGCP5Q96RT8 1024 aa19.56■□□□□ 0.72
SS18-208ENST00000577751 ZDHHC5Q9C0B5 715 aa19.56■□□□□ 0.72
SS18-208ENST00000577751 TMEM9BQ9NQ34 198 aa19.56■□□□□ 0.72
SS18-208ENST00000577751 DTLQ9NZJ0 730 aa19.56■□□□□ 0.72
SS18-208ENST00000577751 TSPAN11A1L157 253 aa19.55■□□□□ 0.72
SS18-208ENST00000577751 MAP3K6O95382 1288 aa19.55■□□□□ 0.72
SS18-208ENST00000577751 PIGNO95427 931 aa19.55■□□□□ 0.72
SS18-208ENST00000577751 TNNT1P13805 278 aa19.55■□□□□ 0.72
SS18-208ENST00000577751 CR2P20023 1033 aa19.55■□□□□ 0.72
SS18-208ENST00000577751 CCNCP24863 283 aa19.55■□□□□ 0.72
SS18-208ENST00000577751 HSPA9P38646 679 aaKnown RBP19.55■□□□□ 0.72
SS18-208ENST00000577751 GRIK2Q13002 908 aa19.55■□□□□ 0.72
SS18-208ENST00000577751 HNRNPDQ14103 355 aaKnown RBP19.55■□□□□ 0.72
SS18-208ENST00000577751 PUM1Q14671 1186 aaKnown RBP eCLIP19.55■□□□□ 0.72
SS18-208ENST00000577751 IFI16Q16666 785 aaKnown RBP19.55■□□□□ 0.72
SS18-208ENST00000577751 MFSD7Q6UXD7 560 aa19.55■□□□□ 0.72
SS18-208ENST00000577751 KIAA1328Q86T90 577 aa19.55■□□□□ 0.72
SS18-208ENST00000577751 HORMAD1Q86X24 394 aa19.55■□□□□ 0.72
SS18-208ENST00000577751 KATNAL2Q8IYT4 538 aa19.55■□□□□ 0.72
SS18-208ENST00000577751 PGBD5Q8N414 524 aa19.55■□□□□ 0.72
SS18-208ENST00000577751 MAML1Q92585 1016 aa19.55■□□□□ 0.72
SS18-208ENST00000577751 NSMCE3Q96MG7 304 aa19.55■□□□□ 0.72
SS18-208ENST00000577751 RTKNQ9BST9 563 aa19.55■□□□□ 0.72
SS18-208ENST00000577751 DESI2Q9BSY9 194 aa19.55■□□□□ 0.72
SS18-208ENST00000577751 SUV39H2Q9H5I1 410 aa19.55■□□□□ 0.72
SS18-208ENST00000577751 ZFR2Q9UPR6 939 aaKnown RBP19.55■□□□□ 0.72
SS18-208ENST00000577751 DMTF1Q9Y222 760 aa19.55■□□□□ 0.72
SS18-208ENST00000577751 A0A1W2PQU0 124 aa19.54■□□□□ 0.72
SS18-208ENST00000577751 C4orf47A7E2U8 309 aa19.54■□□□□ 0.72
SS18-208ENST00000577751 WNT9AO14904 365 aa19.54■□□□□ 0.72
SS18-208ENST00000577751 AREL1O15033 823 aa19.54■□□□□ 0.72
SS18-208ENST00000577751 MATN3O15232 486 aa19.54■□□□□ 0.72
SS18-208ENST00000577751 SPINT1O43278 529 aa19.54■□□□□ 0.72
SS18-208ENST00000577751 TIMP2P16035 220 aa19.54■□□□□ 0.72
SS18-208ENST00000577751 MAT2AP31153 395 aaKnown RBP19.54■□□□□ 0.72
SS18-208ENST00000577751 CDKN2BP42772 138 aa19.54■□□□□ 0.72
SS18-208ENST00000577751 CSNK1EP49674 416 aaKnown RBP19.54■□□□□ 0.72
SS18-208ENST00000577751 ZNF284Q2VY69 593 aa19.54■□□□□ 0.72
SS18-208ENST00000577751 TMEM259Q4ZIN3 620 aa19.54■□□□□ 0.72
SS18-208ENST00000577751 ODF2Q5BJF6 829 aa19.54■□□□□ 0.72
SS18-208ENST00000577751 MARC1Q5VT66 337 aa19.54■□□□□ 0.72
SS18-208ENST00000577751 TIGD7Q6NT04 549 aaPredicted RBP19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms