RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 CTTNBP2NLQ9P2B4 639 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 LRIT1Q9P2V4 623 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 CRNNQ9UBG3 495 aaPredicted RBP5.25□□□□□ -1.57
VPS35-205ENST00000563984 CD300AQ9UGN4 299 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 RCOR1Q9UKL0 485 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 PSME2Q9UL46 239 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 INSL6Q9Y581 213 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 TRPV2Q9Y5S1 764 aa5.25□□□□□ -1.57
VPS35-205ENST00000563984 PPIP5K1Q6PFW1 1433 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 KIAA1107Q9UPP5 1409 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 NESP48681 1621 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 CCDC195A0A1B0GUA6 201 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 A0A1B0GWJ7 208 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 ZSCAN5CA6NGD5 496 aaPredicted RBP5.24□□□□□ -1.57
VPS35-205ENST00000563984 GPR89AB7ZAQ6 455 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 NT5C1B-RDH14C9J2C7 533 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 E7ENX8 843 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 BUB1O43683 1085 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 CLN5O75503 358 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 PIAS2O75928 621 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 GNAI3P08754 354 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 POU2F2P09086 479 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 GPR89BP0CG08 455 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 MYL4P12829 197 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 PORP16435 677 aaPredicted RBP5.24□□□□□ -1.57
VPS35-205ENST00000563984 PRKACAP17612 351 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 CDC25CP30307 473 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 HOXA6P31267 233 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 ACTN2P35609 894 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 GDI2P50395 445 aaKnown RBP5.24□□□□□ -1.57
VPS35-205ENST00000563984 ANXA11P50995 505 aaKnown RBP5.24□□□□□ -1.57
VPS35-205ENST00000563984 CARD18P57730 90 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 KRTAP10-7P60409 375 aaPredicted RBP5.24□□□□□ -1.57
VPS35-205ENST00000563984 GNAI1P63096 354 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 HTD2P86397 168 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 TAP2Q03519 686 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 FPGSQ05932 587 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 BTKQ06187 659 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 DYRK1AQ13627 763 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 HNRNPDQ14103 355 aaKnown RBP5.24□□□□□ -1.57
VPS35-205ENST00000563984 E2F2Q14209 437 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 ZNF169Q14929 603 aaPredicted RBP5.24□□□□□ -1.57
VPS35-205ENST00000563984 AAK1Q2M2I8 961 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 ZNF674Q2M3X9 581 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 ZNF658Q5TYW1 1059 aaPredicted RBP5.24□□□□□ -1.57
VPS35-205ENST00000563984 PAPD4Q6PIY7 484 aaKnown RBP5.24□□□□□ -1.57
VPS35-205ENST00000563984 SLC2A7Q6PXP3 512 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 CLEC17AQ6ZS10 378 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 USP45Q70EL2 814 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 UNC13DQ70J99 1090 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 GPR142Q7Z601 462 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 PHLDB2Q86SQ0 1253 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 DPP9Q86TI2 863 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 SLC51BQ86UW2 128 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 DENND6AQ8IWF6 608 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 CADM3Q8N126 398 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 CFAP52Q8N1V2 620 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 FAM71DQ8N9W8 422 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 SLC17A8Q8NDX2 589 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 SIMC1Q8NDZ2 872 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 TMIEQ8NEW7 156 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 LPCAT1Q8NF37 534 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 ATL1Q8WXF7 558 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 HSPBAP1Q96EW2 488 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 PGBD1Q96JS3 809 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 TSNARE1Q96NA8 513 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 TSC22D3Q99576 134 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 CIB1Q99828 191 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 LLPHQ9BRT6 129 aaKnown RBP5.24□□□□□ -1.57
VPS35-205ENST00000563984 TRIM62Q9BVG3 475 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 WDR12Q9GZL7 423 aaKnown RBP5.24□□□□□ -1.57
VPS35-205ENST00000563984 ZCWPW1Q9H0M4 648 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 WDCPQ9H6R7 721 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 GDAP2Q9NXN4 497 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 CFAP97Q9P2B7 532 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 AASSQ9UDR5 926 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 IL19Q9UHD0 177 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 ANGPTL2Q9UKU9 493 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 CORO1CQ9ULV4 474 aaPredicted RBP5.24□□□□□ -1.57
VPS35-205ENST00000563984 SLC45A2Q9UMX9 530 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 ZBTB1Q9Y2K1 713 aa5.24□□□□□ -1.57
VPS35-205ENST00000563984 GOLGA8QA0A0J9YX86 632 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 HEATR9A2RTY3 570 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 GOLGA8OA6NCC3 632 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 SNTNA6NMZ2 147 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 HSBP1L1C9JCN9 74 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 F5H0A9 414 aaPredicted RBP5.23□□□□□ -1.57
VPS35-205ENST00000563984 GOLGA8NF8WBI6 632 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 PER2O15055 1255 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 ATP5HO75947 161 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 SLU7O95391 586 aaKnown RBP5.23□□□□□ -1.57
VPS35-205ENST00000563984 SNRNP70P08621 437 aaKnown RBP5.23□□□□□ -1.57
VPS35-205ENST00000563984 CLTBP09497 229 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 PF4V1P10720 104 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 ANXA8P13928 327 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 ALOX12P18054 663 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 AKAP5P24588 427 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 NFKBIAP25963 317 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 EEF1DP29692 281 aaKnown RBP5.23□□□□□ -1.57
VPS35-205ENST00000563984 ALDH3A1P30838 453 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms